Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19180

Experiment: rhizosphere sample 8; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS19175 and ABZR87_RS19180 are separated by 267 nucleotidesABZR87_RS19180 and ABZR87_RS19185 overlap by 17 nucleotidesABZR87_RS19185 and ABZR87_RS19190 are separated by 105 nucleotides ABZR87_RS19175: ABZR87_RS19175 - AraC family transcriptional regulator, at 666,060 to 666,839 _RS19175 ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651 _RS19180 ABZR87_RS19185: ABZR87_RS19185 - response regulator, at 668,635 to 669,294 _RS19185 ABZR87_RS19190: ABZR87_RS19190 - Spy/CpxP family protein refolding chaperone, at 669,400 to 669,975 _RS19190 Position (kb) 667 668 669Strain fitness (log2 ratio) -2 -1 0 1 2at 666.224 kb on - strand, within ABZR87_RS19175at 666.224 kb on - strand, within ABZR87_RS19175at 666.267 kb on + strand, within ABZR87_RS19175at 666.268 kb on - strand, within ABZR87_RS19175at 666.430 kb on - strand, within ABZR87_RS19175at 666.619 kb on + strand, within ABZR87_RS19175at 666.620 kb on - strand, within ABZR87_RS19175at 666.620 kb on - strand, within ABZR87_RS19175at 666.620 kb on - strand, within ABZR87_RS19175at 666.952 kb on + strandat 666.952 kb on + strandat 666.998 kb on + strandat 666.998 kb on + strandat 666.998 kb on + strandat 666.998 kb on + strandat 666.999 kb on - strandat 666.999 kb on - strandat 667.030 kb on + strandat 667.030 kb on + strandat 667.227 kb on + strandat 667.227 kb on + strandat 667.228 kb on - strandat 667.288 kb on - strand, within ABZR87_RS19180at 667.715 kb on + strand, within ABZR87_RS19180at 667.715 kb on + strand, within ABZR87_RS19180at 667.716 kb on - strand, within ABZR87_RS19180at 667.839 kb on + strand, within ABZR87_RS19180at 667.839 kb on + strand, within ABZR87_RS19180at 667.839 kb on + strand, within ABZR87_RS19180at 667.840 kb on - strand, within ABZR87_RS19180at 667.840 kb on - strand, within ABZR87_RS19180at 668.042 kb on + strand, within ABZR87_RS19180at 668.043 kb on - strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.331 kb on + strand, within ABZR87_RS19180at 668.333 kb on + strand, within ABZR87_RS19180at 668.334 kb on - strand, within ABZR87_RS19180at 668.687 kb on - strandat 668.687 kb on - strandat 668.687 kb on - strandat 668.705 kb on - strand, within ABZR87_RS19185at 668.731 kb on - strand, within ABZR87_RS19185at 668.731 kb on - strand, within ABZR87_RS19185at 668.920 kb on + strand, within ABZR87_RS19185at 668.921 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.157 kb on + strand, within ABZR87_RS19185at 669.158 kb on - strand, within ABZR87_RS19185at 669.346 kb on - strandat 669.350 kb on + strandat 669.350 kb on + strandat 669.351 kb on + strandat 669.351 kb on - strandat 669.351 kb on - strandat 669.356 kb on + strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.384 kb on + strandat 669.385 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
remove
666,224 - ABZR87_RS19175 0.21 +0.8
666,224 - ABZR87_RS19175 0.21 +0.4
666,267 + ABZR87_RS19175 0.27 +0.9
666,268 - ABZR87_RS19175 0.27 +1.6
666,430 - ABZR87_RS19175 0.47 +0.1
666,619 + ABZR87_RS19175 0.72 +0.8
666,620 - ABZR87_RS19175 0.72 +1.2
666,620 - ABZR87_RS19175 0.72 +2.5
666,620 - ABZR87_RS19175 0.72 -0.8
666,952 + -1.0
666,952 + +1.8
666,998 + -0.4
666,998 + -0.2
666,998 + -0.8
666,998 + -1.5
666,999 - -0.1
666,999 - -1.1
667,030 + -0.5
667,030 + +1.1
667,227 + -0.1
667,227 + -0.7
667,228 - +0.5
667,288 - ABZR87_RS19180 0.12 -0.0
667,715 + ABZR87_RS19180 0.39 +0.2
667,715 + ABZR87_RS19180 0.39 -0.3
667,716 - ABZR87_RS19180 0.39 +0.5
667,839 + ABZR87_RS19180 0.47 -1.2
667,839 + ABZR87_RS19180 0.47 -0.1
667,839 + ABZR87_RS19180 0.47 +0.4
667,840 - ABZR87_RS19180 0.47 +0.1
667,840 - ABZR87_RS19180 0.47 +0.6
668,042 + ABZR87_RS19180 0.61 +0.6
668,043 - ABZR87_RS19180 0.61 -1.3
668,103 + ABZR87_RS19180 0.64 -0.8
668,103 + ABZR87_RS19180 0.64 +0.2
668,103 + ABZR87_RS19180 0.64 -0.4
668,103 + ABZR87_RS19180 0.64 -1.1
668,103 + ABZR87_RS19180 0.64 +0.3
668,104 - ABZR87_RS19180 0.65 +1.0
668,104 - ABZR87_RS19180 0.65 -0.8
668,104 - ABZR87_RS19180 0.65 -0.3
668,104 - ABZR87_RS19180 0.65 +0.8
668,331 + ABZR87_RS19180 0.79 -1.1
668,333 + ABZR87_RS19180 0.79 +0.6
668,334 - ABZR87_RS19180 0.79 -1.5
668,687 - +1.1
668,687 - +1.4
668,687 - -0.9
668,705 - ABZR87_RS19185 0.11 -1.0
668,731 - ABZR87_RS19185 0.15 -0.5
668,731 - ABZR87_RS19185 0.15 -0.8
668,920 + ABZR87_RS19185 0.43 +1.5
668,921 - ABZR87_RS19185 0.43 +0.6
669,038 - ABZR87_RS19185 0.61 +1.1
669,038 - ABZR87_RS19185 0.61 -0.3
669,038 - ABZR87_RS19185 0.61 -2.3
669,157 + ABZR87_RS19185 0.79 -0.4
669,158 - ABZR87_RS19185 0.79 -0.9
669,346 - -1.1
669,350 + -0.1
669,350 + +1.3
669,351 + -2.7
669,351 - +0.9
669,351 - +0.4
669,356 + -0.0
669,357 - +0.5
669,357 - -0.3
669,357 - -1.9
669,357 - +0.5
669,384 + -0.1
669,385 - -0.1

Or see this region's nucleotide sequence