Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18900

Experiment: rhizosphere sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18895 and ABZR87_RS18900 are separated by 11 nucleotidesABZR87_RS18900 and ABZR87_RS18905 overlap by 56 nucleotides ABZR87_RS18895: ABZR87_RS18895 - DUF3274 domain-containing protein, at 594,859 to 597,369 _RS18895 ABZR87_RS18900: ABZR87_RS18900 - type VI secretion system tip protein TssI/VgrG, at 597,381 to 599,009 _RS18900 ABZR87_RS18905: ABZR87_RS18905 - phage late control D family protein, at 598,954 to 600,012 _RS18905 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1at 596.391 kb on - strand, within ABZR87_RS18895at 596.391 kb on - strand, within ABZR87_RS18895at 596.436 kb on + strand, within ABZR87_RS18895at 596.436 kb on + strand, within ABZR87_RS18895at 596.436 kb on + strand, within ABZR87_RS18895at 596.436 kb on + strand, within ABZR87_RS18895at 596.437 kb on - strand, within ABZR87_RS18895at 596.437 kb on - strand, within ABZR87_RS18895at 596.522 kb on + strand, within ABZR87_RS18895at 596.522 kb on + strand, within ABZR87_RS18895at 596.522 kb on + strand, within ABZR87_RS18895at 596.523 kb on - strand, within ABZR87_RS18895at 596.523 kb on - strand, within ABZR87_RS18895at 596.562 kb on - strand, within ABZR87_RS18895at 596.582 kb on + strand, within ABZR87_RS18895at 596.583 kb on - strand, within ABZR87_RS18895at 596.583 kb on - strand, within ABZR87_RS18895at 596.583 kb on - strand, within ABZR87_RS18895at 596.583 kb on - strand, within ABZR87_RS18895at 596.583 kb on - strand, within ABZR87_RS18895at 596.583 kb on - strand, within ABZR87_RS18895at 596.586 kb on + strand, within ABZR87_RS18895at 596.702 kb on + strand, within ABZR87_RS18895at 596.703 kb on - strand, within ABZR87_RS18895at 596.771 kb on + strand, within ABZR87_RS18895at 596.827 kb on + strand, within ABZR87_RS18895at 596.827 kb on + strand, within ABZR87_RS18895at 596.827 kb on + strand, within ABZR87_RS18895at 596.827 kb on + strand, within ABZR87_RS18895at 596.828 kb on - strand, within ABZR87_RS18895at 596.828 kb on - strand, within ABZR87_RS18895at 596.828 kb on - strand, within ABZR87_RS18895at 596.947 kb on - strand, within ABZR87_RS18895at 597.078 kb on - strand, within ABZR87_RS18895at 597.105 kb on - strand, within ABZR87_RS18895at 597.118 kb on + strand, within ABZR87_RS18895at 597.119 kb on - strandat 597.119 kb on - strandat 597.119 kb on - strandat 597.285 kb on + strandat 597.285 kb on + strandat 597.286 kb on - strandat 597.286 kb on - strandat 597.286 kb on - strandat 597.286 kb on - strandat 597.508 kb on + strandat 597.508 kb on + strandat 597.508 kb on + strandat 597.508 kb on + strandat 597.509 kb on - strandat 597.509 kb on - strandat 597.638 kb on + strand, within ABZR87_RS18900at 597.901 kb on + strand, within ABZR87_RS18900at 597.902 kb on - strand, within ABZR87_RS18900at 597.940 kb on - strand, within ABZR87_RS18900at 597.964 kb on + strand, within ABZR87_RS18900at 597.965 kb on - strand, within ABZR87_RS18900at 597.987 kb on - strand, within ABZR87_RS18900at 598.013 kb on - strand, within ABZR87_RS18900at 598.150 kb on + strand, within ABZR87_RS18900at 598.150 kb on + strand, within ABZR87_RS18900at 598.150 kb on + strand, within ABZR87_RS18900at 598.280 kb on + strand, within ABZR87_RS18900at 598.363 kb on + strand, within ABZR87_RS18900at 598.363 kb on + strand, within ABZR87_RS18900at 598.363 kb on + strand, within ABZR87_RS18900at 598.364 kb on - strand, within ABZR87_RS18900at 598.562 kb on + strand, within ABZR87_RS18900at 598.563 kb on - strand, within ABZR87_RS18900at 598.563 kb on - strand, within ABZR87_RS18900at 598.582 kb on + strand, within ABZR87_RS18900at 598.662 kb on + strand, within ABZR87_RS18900at 598.663 kb on - strand, within ABZR87_RS18900at 598.663 kb on - strand, within ABZR87_RS18900at 598.688 kb on - strand, within ABZR87_RS18900at 598.688 kb on - strand, within ABZR87_RS18900at 598.787 kb on + strand, within ABZR87_RS18900at 598.787 kb on + strand, within ABZR87_RS18900at 598.981 kb on + strandat 598.982 kb on - strandat 599.096 kb on + strand, within ABZR87_RS18905at 599.097 kb on - strand, within ABZR87_RS18905at 599.111 kb on + strand, within ABZR87_RS18905at 599.111 kb on + strand, within ABZR87_RS18905at 599.112 kb on - strand, within ABZR87_RS18905at 599.112 kb on - strand, within ABZR87_RS18905at 599.112 kb on - strand, within ABZR87_RS18905at 599.112 kb on - strand, within ABZR87_RS18905at 599.117 kb on + strand, within ABZR87_RS18905at 599.139 kb on - strand, within ABZR87_RS18905at 599.139 kb on - strand, within ABZR87_RS18905at 599.198 kb on + strand, within ABZR87_RS18905at 599.198 kb on + strand, within ABZR87_RS18905at 599.198 kb on + strand, within ABZR87_RS18905at 599.198 kb on + strand, within ABZR87_RS18905at 599.306 kb on + strand, within ABZR87_RS18905at 599.306 kb on + strand, within ABZR87_RS18905at 599.325 kb on + strand, within ABZR87_RS18905at 599.326 kb on - strand, within ABZR87_RS18905at 599.391 kb on - strand, within ABZR87_RS18905at 599.391 kb on - strand, within ABZR87_RS18905at 599.616 kb on - strand, within ABZR87_RS18905at 599.616 kb on - strand, within ABZR87_RS18905at 599.616 kb on - strand, within ABZR87_RS18905at 599.621 kb on + strand, within ABZR87_RS18905at 599.676 kb on + strand, within ABZR87_RS18905at 599.677 kb on - strand, within ABZR87_RS18905at 599.834 kb on + strand, within ABZR87_RS18905at 599.835 kb on - strand, within ABZR87_RS18905at 599.971 kb on + strandat 599.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
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596,391 - ABZR87_RS18895 0.61 +0.1
596,391 - ABZR87_RS18895 0.61 +0.5
596,436 + ABZR87_RS18895 0.63 -1.7
596,436 + ABZR87_RS18895 0.63 -0.1
596,436 + ABZR87_RS18895 0.63 -0.7
596,436 + ABZR87_RS18895 0.63 +0.8
596,437 - ABZR87_RS18895 0.63 -0.2
596,437 - ABZR87_RS18895 0.63 -0.9
596,522 + ABZR87_RS18895 0.66 +1.5
596,522 + ABZR87_RS18895 0.66 +0.1
596,522 + ABZR87_RS18895 0.66 +0.1
596,523 - ABZR87_RS18895 0.66 -0.0
596,523 - ABZR87_RS18895 0.66 -0.9
596,562 - ABZR87_RS18895 0.68 -1.0
596,582 + ABZR87_RS18895 0.69 -0.2
596,583 - ABZR87_RS18895 0.69 -1.4
596,583 - ABZR87_RS18895 0.69 -0.2
596,583 - ABZR87_RS18895 0.69 -2.0
596,583 - ABZR87_RS18895 0.69 -0.2
596,583 - ABZR87_RS18895 0.69 +0.7
596,583 - ABZR87_RS18895 0.69 +1.0
596,586 + ABZR87_RS18895 0.69 -0.7
596,702 + ABZR87_RS18895 0.73 -0.2
596,703 - ABZR87_RS18895 0.73 +1.0
596,771 + ABZR87_RS18895 0.76 +0.5
596,827 + ABZR87_RS18895 0.78 +0.2
596,827 + ABZR87_RS18895 0.78 +0.5
596,827 + ABZR87_RS18895 0.78 +1.0
596,827 + ABZR87_RS18895 0.78 -1.1
596,828 - ABZR87_RS18895 0.78 +0.7
596,828 - ABZR87_RS18895 0.78 +0.7
596,828 - ABZR87_RS18895 0.78 +0.7
596,947 - ABZR87_RS18895 0.83 -1.5
597,078 - ABZR87_RS18895 0.88 -0.6
597,105 - ABZR87_RS18895 0.89 -0.9
597,118 + ABZR87_RS18895 0.90 -0.9
597,119 - -0.4
597,119 - -0.0
597,119 - +1.5
597,285 + +0.1
597,285 + +0.1
597,286 - -0.1
597,286 - +0.3
597,286 - -0.2
597,286 - -0.2
597,508 + -0.6
597,508 + +0.6
597,508 + -0.5
597,508 + +0.5
597,509 - -2.1
597,509 - -0.9
597,638 + ABZR87_RS18900 0.16 -0.7
597,901 + ABZR87_RS18900 0.32 -0.8
597,902 - ABZR87_RS18900 0.32 -0.2
597,940 - ABZR87_RS18900 0.34 -0.5
597,964 + ABZR87_RS18900 0.36 +0.7
597,965 - ABZR87_RS18900 0.36 -0.5
597,987 - ABZR87_RS18900 0.37 -0.4
598,013 - ABZR87_RS18900 0.39 -1.4
598,150 + ABZR87_RS18900 0.47 +0.9
598,150 + ABZR87_RS18900 0.47 -1.1
598,150 + ABZR87_RS18900 0.47 +1.4
598,280 + ABZR87_RS18900 0.55 -0.8
598,363 + ABZR87_RS18900 0.60 -0.4
598,363 + ABZR87_RS18900 0.60 -0.1
598,363 + ABZR87_RS18900 0.60 -1.0
598,364 - ABZR87_RS18900 0.60 -0.0
598,562 + ABZR87_RS18900 0.72 -1.6
598,563 - ABZR87_RS18900 0.73 +0.3
598,563 - ABZR87_RS18900 0.73 -1.1
598,582 + ABZR87_RS18900 0.74 -0.9
598,662 + ABZR87_RS18900 0.79 +1.0
598,663 - ABZR87_RS18900 0.79 +1.3
598,663 - ABZR87_RS18900 0.79 +0.0
598,688 - ABZR87_RS18900 0.80 -1.0
598,688 - ABZR87_RS18900 0.80 -0.3
598,787 + ABZR87_RS18900 0.86 +1.1
598,787 + ABZR87_RS18900 0.86 +0.9
598,981 + -3.2
598,982 - +0.5
599,096 + ABZR87_RS18905 0.13 -0.5
599,097 - ABZR87_RS18905 0.14 +0.8
599,111 + ABZR87_RS18905 0.15 -0.1
599,111 + ABZR87_RS18905 0.15 -0.1
599,112 - ABZR87_RS18905 0.15 -1.1
599,112 - ABZR87_RS18905 0.15 -0.4
599,112 - ABZR87_RS18905 0.15 +0.7
599,112 - ABZR87_RS18905 0.15 +0.9
599,117 + ABZR87_RS18905 0.15 +0.3
599,139 - ABZR87_RS18905 0.17 -1.1
599,139 - ABZR87_RS18905 0.17 -0.0
599,198 + ABZR87_RS18905 0.23 +0.1
599,198 + ABZR87_RS18905 0.23 -1.6
599,198 + ABZR87_RS18905 0.23 +0.2
599,198 + ABZR87_RS18905 0.23 -0.6
599,306 + ABZR87_RS18905 0.33 +0.4
599,306 + ABZR87_RS18905 0.33 +0.2
599,325 + ABZR87_RS18905 0.35 +0.1
599,326 - ABZR87_RS18905 0.35 +0.0
599,391 - ABZR87_RS18905 0.41 +0.4
599,391 - ABZR87_RS18905 0.41 -1.0
599,616 - ABZR87_RS18905 0.63 +1.2
599,616 - ABZR87_RS18905 0.63 +0.3
599,616 - ABZR87_RS18905 0.63 +0.3
599,621 + ABZR87_RS18905 0.63 -0.0
599,676 + ABZR87_RS18905 0.68 -1.2
599,677 - ABZR87_RS18905 0.68 -0.6
599,834 + ABZR87_RS18905 0.83 +0.4
599,835 - ABZR87_RS18905 0.83 -0.3
599,971 + +0.4
599,972 - -0.2

Or see this region's nucleotide sequence