Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18865 and ABZR87_RS18870 are separated by 14 nucleotides ABZR87_RS18870 and ABZR87_RS18875 are separated by 23 nucleotides ABZR87_RS18875 and ABZR87_RS18880 are separated by 2 nucleotides
ABZR87_RS18865: ABZR87_RS18865 - MFS transporter, at 584,603 to 585,925
_RS18865
ABZR87_RS18870: ABZR87_RS18870 - nitrite reductase large subunit NirB, at 585,940 to 588,495
_RS18870
ABZR87_RS18875: ABZR87_RS18875 - nitrite reductase small subunit NirD, at 588,519 to 588,857
_RS18875
ABZR87_RS18880: ABZR87_RS18880 - FAD-dependent oxidoreductase, at 588,860 to 590,086
_RS18880
Position (kb) 585
586
587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 584.987 kb on + strand, within ABZR87_RS18865 at 584.988 kb on - strand, within ABZR87_RS18865 at 585.195 kb on - strand, within ABZR87_RS18865 at 585.203 kb on + strand, within ABZR87_RS18865 at 585.204 kb on - strand, within ABZR87_RS18865 at 585.205 kb on + strand, within ABZR87_RS18865 at 585.206 kb on - strand, within ABZR87_RS18865 at 585.315 kb on - strand, within ABZR87_RS18865 at 585.315 kb on - strand, within ABZR87_RS18865 at 585.315 kb on - strand, within ABZR87_RS18865 at 585.341 kb on + strand, within ABZR87_RS18865 at 585.376 kb on + strand, within ABZR87_RS18865 at 585.377 kb on - strand, within ABZR87_RS18865 at 585.377 kb on - strand, within ABZR87_RS18865 at 585.388 kb on + strand, within ABZR87_RS18865 at 585.389 kb on - strand, within ABZR87_RS18865 at 585.392 kb on + strand, within ABZR87_RS18865 at 585.392 kb on + strand, within ABZR87_RS18865 at 585.393 kb on - strand, within ABZR87_RS18865 at 585.393 kb on - strand, within ABZR87_RS18865 at 585.393 kb on - strand, within ABZR87_RS18865 at 585.393 kb on - strand, within ABZR87_RS18865 at 585.393 kb on - strand, within ABZR87_RS18865 at 585.393 kb on - strand, within ABZR87_RS18865 at 585.395 kb on + strand, within ABZR87_RS18865 at 585.395 kb on + strand, within ABZR87_RS18865 at 585.396 kb on - strand, within ABZR87_RS18865 at 585.396 kb on - strand, within ABZR87_RS18865 at 585.396 kb on - strand, within ABZR87_RS18865 at 585.396 kb on - strand, within ABZR87_RS18865 at 585.396 kb on - strand, within ABZR87_RS18865 at 585.649 kb on + strand, within ABZR87_RS18865 at 585.650 kb on - strand, within ABZR87_RS18865 at 585.668 kb on + strand, within ABZR87_RS18865 at 585.668 kb on + strand, within ABZR87_RS18865 at 585.668 kb on + strand, within ABZR87_RS18865 at 585.668 kb on + strand, within ABZR87_RS18865 at 585.668 kb on + strand, within ABZR87_RS18865 at 585.668 kb on + strand, within ABZR87_RS18865 at 585.669 kb on - strand, within ABZR87_RS18865 at 585.784 kb on + strand, within ABZR87_RS18865 at 585.890 kb on + strand at 585.891 kb on - strand at 585.891 kb on - strand at 586.064 kb on - strand at 586.237 kb on + strand, within ABZR87_RS18870 at 586.318 kb on + strand, within ABZR87_RS18870 at 587.002 kb on + strand, within ABZR87_RS18870 at 587.002 kb on + strand, within ABZR87_RS18870 at 587.002 kb on + strand, within ABZR87_RS18870 at 587.003 kb on - strand, within ABZR87_RS18870 at 587.035 kb on + strand, within ABZR87_RS18870 at 587.036 kb on - strand, within ABZR87_RS18870 at 587.074 kb on + strand, within ABZR87_RS18870 at 587.074 kb on + strand, within ABZR87_RS18870 at 587.425 kb on + strand, within ABZR87_RS18870 at 587.425 kb on + strand, within ABZR87_RS18870 at 587.425 kb on + strand, within ABZR87_RS18870 at 587.425 kb on + strand, within ABZR87_RS18870 at 587.425 kb on + strand, within ABZR87_RS18870 at 587.425 kb on + strand, within ABZR87_RS18870 at 587.426 kb on - strand, within ABZR87_RS18870 at 587.426 kb on - strand, within ABZR87_RS18870 at 587.629 kb on + strand, within ABZR87_RS18870 at 587.707 kb on + strand, within ABZR87_RS18870 at 587.707 kb on + strand, within ABZR87_RS18870 at 587.716 kb on + strand, within ABZR87_RS18870 at 587.827 kb on + strand, within ABZR87_RS18870 at 587.845 kb on - strand, within ABZR87_RS18870 at 587.929 kb on + strand, within ABZR87_RS18870 at 587.930 kb on - strand, within ABZR87_RS18870 at 587.930 kb on - strand, within ABZR87_RS18870 at 588.049 kb on + strand, within ABZR87_RS18870 at 588.049 kb on + strand, within ABZR87_RS18870 at 588.049 kb on + strand, within ABZR87_RS18870 at 588.049 kb on + strand, within ABZR87_RS18870 at 588.049 kb on + strand, within ABZR87_RS18870 at 588.130 kb on + strand, within ABZR87_RS18870 at 588.130 kb on + strand, within ABZR87_RS18870 at 588.130 kb on + strand, within ABZR87_RS18870 at 588.131 kb on - strand, within ABZR87_RS18870 at 588.131 kb on - strand, within ABZR87_RS18870 at 588.131 kb on - strand, within ABZR87_RS18870 at 588.154 kb on + strand, within ABZR87_RS18870 at 588.154 kb on + strand, within ABZR87_RS18870 at 588.154 kb on + strand, within ABZR87_RS18870 at 588.155 kb on - strand, within ABZR87_RS18870 at 588.224 kb on - strand, within ABZR87_RS18870 at 588.304 kb on + strand at 588.305 kb on - strand at 588.305 kb on - strand at 588.305 kb on - strand at 588.305 kb on - strand at 588.648 kb on + strand, within ABZR87_RS18875 at 588.649 kb on - strand, within ABZR87_RS18875 at 588.663 kb on + strand, within ABZR87_RS18875 at 588.663 kb on + strand, within ABZR87_RS18875 at 588.664 kb on - strand, within ABZR87_RS18875 at 588.840 kb on - strand at 588.992 kb on + strand, within ABZR87_RS18880 at 588.993 kb on - strand, within ABZR87_RS18880 at 588.993 kb on - strand, within ABZR87_RS18880 at 589.070 kb on + strand, within ABZR87_RS18880 at 589.071 kb on - strand, within ABZR87_RS18880
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 584,987 + ABZR87_RS18865 0.29 +0.6 584,988 - ABZR87_RS18865 0.29 -0.1 585,195 - ABZR87_RS18865 0.45 -1.3 585,203 + ABZR87_RS18865 0.45 -0.4 585,204 - ABZR87_RS18865 0.45 -1.4 585,205 + ABZR87_RS18865 0.46 -1.4 585,206 - ABZR87_RS18865 0.46 -0.7 585,315 - ABZR87_RS18865 0.54 +0.3 585,315 - ABZR87_RS18865 0.54 -0.4 585,315 - ABZR87_RS18865 0.54 -0.4 585,341 + ABZR87_RS18865 0.56 +0.0 585,376 + ABZR87_RS18865 0.58 -0.5 585,377 - ABZR87_RS18865 0.59 -1.8 585,377 - ABZR87_RS18865 0.59 -0.1 585,388 + ABZR87_RS18865 0.59 -0.0 585,389 - ABZR87_RS18865 0.59 -0.2 585,392 + ABZR87_RS18865 0.60 -1.2 585,392 + ABZR87_RS18865 0.60 +0.7 585,393 - ABZR87_RS18865 0.60 -0.8 585,393 - ABZR87_RS18865 0.60 -0.6 585,393 - ABZR87_RS18865 0.60 +0.5 585,393 - ABZR87_RS18865 0.60 +0.8 585,393 - ABZR87_RS18865 0.60 +0.4 585,393 - ABZR87_RS18865 0.60 +0.1 585,395 + ABZR87_RS18865 0.60 +0.2 585,395 + ABZR87_RS18865 0.60 -0.3 585,396 - ABZR87_RS18865 0.60 -0.7 585,396 - ABZR87_RS18865 0.60 -0.7 585,396 - ABZR87_RS18865 0.60 -0.4 585,396 - ABZR87_RS18865 0.60 -1.3 585,396 - ABZR87_RS18865 0.60 +0.9 585,649 + ABZR87_RS18865 0.79 -1.2 585,650 - ABZR87_RS18865 0.79 +0.6 585,668 + ABZR87_RS18865 0.80 -0.0 585,668 + ABZR87_RS18865 0.80 +1.6 585,668 + ABZR87_RS18865 0.80 +0.9 585,668 + ABZR87_RS18865 0.80 -0.5 585,668 + ABZR87_RS18865 0.80 -0.0 585,668 + ABZR87_RS18865 0.80 -1.6 585,669 - ABZR87_RS18865 0.81 -2.1 585,784 + ABZR87_RS18865 0.89 -0.3 585,890 + -0.4 585,891 - +0.3 585,891 - -0.2 586,064 - -0.3 586,237 + ABZR87_RS18870 0.12 +0.1 586,318 + ABZR87_RS18870 0.15 +0.1 587,002 + ABZR87_RS18870 0.42 +1.1 587,002 + ABZR87_RS18870 0.42 -0.2 587,002 + ABZR87_RS18870 0.42 -2.4 587,003 - ABZR87_RS18870 0.42 +0.7 587,035 + ABZR87_RS18870 0.43 -0.2 587,036 - ABZR87_RS18870 0.43 +0.0 587,074 + ABZR87_RS18870 0.44 -1.2 587,074 + ABZR87_RS18870 0.44 +0.1 587,425 + ABZR87_RS18870 0.58 +0.2 587,425 + ABZR87_RS18870 0.58 -0.6 587,425 + ABZR87_RS18870 0.58 +1.1 587,425 + ABZR87_RS18870 0.58 -0.5 587,425 + ABZR87_RS18870 0.58 -0.4 587,425 + ABZR87_RS18870 0.58 -0.9 587,426 - ABZR87_RS18870 0.58 -0.8 587,426 - ABZR87_RS18870 0.58 -0.9 587,629 + ABZR87_RS18870 0.66 +1.2 587,707 + ABZR87_RS18870 0.69 -0.4 587,707 + ABZR87_RS18870 0.69 -2.2 587,716 + ABZR87_RS18870 0.69 +0.6 587,827 + ABZR87_RS18870 0.74 +0.2 587,845 - ABZR87_RS18870 0.75 -0.3 587,929 + ABZR87_RS18870 0.78 -0.3 587,930 - ABZR87_RS18870 0.78 +0.8 587,930 - ABZR87_RS18870 0.78 -0.3 588,049 + ABZR87_RS18870 0.83 -1.0 588,049 + ABZR87_RS18870 0.83 -0.3 588,049 + ABZR87_RS18870 0.83 +0.2 588,049 + ABZR87_RS18870 0.83 +0.8 588,049 + ABZR87_RS18870 0.83 -0.5 588,130 + ABZR87_RS18870 0.86 +0.8 588,130 + ABZR87_RS18870 0.86 -0.7 588,130 + ABZR87_RS18870 0.86 -0.4 588,131 - ABZR87_RS18870 0.86 -0.7 588,131 - ABZR87_RS18870 0.86 -0.3 588,131 - ABZR87_RS18870 0.86 +0.3 588,154 + ABZR87_RS18870 0.87 -0.2 588,154 + ABZR87_RS18870 0.87 -2.3 588,154 + ABZR87_RS18870 0.87 +0.6 588,155 - ABZR87_RS18870 0.87 -1.2 588,224 - ABZR87_RS18870 0.89 +2.1 588,304 + -1.4 588,305 - +3.1 588,305 - -1.7 588,305 - -0.6 588,305 - +0.3 588,648 + ABZR87_RS18875 0.38 -0.6 588,649 - ABZR87_RS18875 0.38 -1.8 588,663 + ABZR87_RS18875 0.42 -0.3 588,663 + ABZR87_RS18875 0.42 -1.1 588,664 - ABZR87_RS18875 0.43 -0.5 588,840 - -0.1 588,992 + ABZR87_RS18880 0.11 -1.2 588,993 - ABZR87_RS18880 0.11 -1.0 588,993 - ABZR87_RS18880 0.11 +0.3 589,070 + ABZR87_RS18880 0.17 +0.3 589,071 - ABZR87_RS18880 0.17 -0.5
Or see this region's nucleotide sequence