Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18260 and ABZR87_RS18265 are separated by 301 nucleotides ABZR87_RS18265 and ABZR87_RS18270 are separated by 9 nucleotides ABZR87_RS18270 and ABZR87_RS18275 are separated by 157 nucleotides
ABZR87_RS18260: ABZR87_RS18260 - IlvD/Edd family dehydratase, at 466,939 to 468,723
_RS18260
ABZR87_RS18265: ABZR87_RS18265 - hypothetical protein, at 469,025 to 469,555
_RS18265
ABZR87_RS18270: ABZR87_RS18270 - XRE family transcriptional regulator, at 469,565 to 470,167
_RS18270
ABZR87_RS18275: ABZR87_RS18275 - MBL fold metallo-hydrolase, at 470,325 to 471,149
_RS18275
Position (kb) 469
470 Strain fitness (log2 ratio) -1
0
1
2
3 at 468.405 kb on - strand, within ABZR87_RS18260 at 468.405 kb on - strand, within ABZR87_RS18260 at 468.499 kb on + strand, within ABZR87_RS18260 at 468.623 kb on + strand at 468.644 kb on + strand at 468.738 kb on + strand at 468.738 kb on + strand at 468.738 kb on + strand at 468.739 kb on - strand at 468.739 kb on - strand at 468.739 kb on - strand at 468.739 kb on - strand at 468.739 kb on - strand at 468.827 kb on + strand at 468.863 kb on - strand at 468.939 kb on + strand at 468.939 kb on + strand at 468.940 kb on - strand at 468.986 kb on + strand at 468.986 kb on + strand at 468.987 kb on - strand at 469.036 kb on - strand at 469.164 kb on + strand, within ABZR87_RS18265 at 469.164 kb on + strand, within ABZR87_RS18265 at 469.346 kb on + strand, within ABZR87_RS18265 at 469.346 kb on + strand, within ABZR87_RS18265 at 469.346 kb on + strand, within ABZR87_RS18265 at 469.346 kb on + strand, within ABZR87_RS18265 at 469.346 kb on + strand, within ABZR87_RS18265 at 469.347 kb on - strand, within ABZR87_RS18265 at 469.347 kb on - strand, within ABZR87_RS18265 at 469.347 kb on - strand, within ABZR87_RS18265 at 469.557 kb on + strand at 469.593 kb on + strand at 469.594 kb on - strand at 469.674 kb on + strand, within ABZR87_RS18270 at 469.674 kb on + strand, within ABZR87_RS18270 at 469.674 kb on + strand, within ABZR87_RS18270 at 469.675 kb on - strand, within ABZR87_RS18270 at 469.675 kb on - strand, within ABZR87_RS18270 at 469.675 kb on - strand, within ABZR87_RS18270 at 469.719 kb on - strand, within ABZR87_RS18270 at 469.719 kb on - strand, within ABZR87_RS18270 at 469.788 kb on + strand, within ABZR87_RS18270 at 469.788 kb on + strand, within ABZR87_RS18270 at 469.788 kb on + strand, within ABZR87_RS18270 at 469.788 kb on + strand, within ABZR87_RS18270 at 469.788 kb on + strand, within ABZR87_RS18270 at 469.789 kb on - strand, within ABZR87_RS18270 at 469.789 kb on - strand, within ABZR87_RS18270 at 469.789 kb on - strand, within ABZR87_RS18270 at 469.789 kb on - strand, within ABZR87_RS18270 at 469.789 kb on - strand, within ABZR87_RS18270 at 469.794 kb on + strand, within ABZR87_RS18270 at 469.795 kb on - strand, within ABZR87_RS18270 at 469.837 kb on + strand, within ABZR87_RS18270 at 469.838 kb on - strand, within ABZR87_RS18270 at 470.212 kb on + strand at 470.212 kb on + strand at 470.213 kb on - strand at 470.213 kb on - strand at 470.352 kb on + strand at 470.403 kb on + strand at 470.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 468,405 - ABZR87_RS18260 0.82 +0.1 468,405 - ABZR87_RS18260 0.82 +0.4 468,499 + ABZR87_RS18260 0.87 +0.7 468,623 + +1.9 468,644 + -0.1 468,738 + +0.4 468,738 + +0.4 468,738 + -0.5 468,739 - -1.2 468,739 - +2.4 468,739 - +1.1 468,739 - +0.4 468,739 - -1.1 468,827 + +0.1 468,863 - +0.1 468,939 + -0.8 468,939 + +1.3 468,940 - +0.1 468,986 + -0.4 468,986 + -0.1 468,987 - +0.1 469,036 - -1.1 469,164 + ABZR87_RS18265 0.26 -0.2 469,164 + ABZR87_RS18265 0.26 +0.4 469,346 + ABZR87_RS18265 0.60 +1.8 469,346 + ABZR87_RS18265 0.60 -0.5 469,346 + ABZR87_RS18265 0.60 -1.3 469,346 + ABZR87_RS18265 0.60 +0.6 469,346 + ABZR87_RS18265 0.60 +0.2 469,347 - ABZR87_RS18265 0.61 +0.3 469,347 - ABZR87_RS18265 0.61 +2.8 469,347 - ABZR87_RS18265 0.61 -0.5 469,557 + -1.1 469,593 + -0.6 469,594 - -0.2 469,674 + ABZR87_RS18270 0.18 +0.1 469,674 + ABZR87_RS18270 0.18 -0.9 469,674 + ABZR87_RS18270 0.18 -1.0 469,675 - ABZR87_RS18270 0.18 -0.9 469,675 - ABZR87_RS18270 0.18 +0.2 469,675 - ABZR87_RS18270 0.18 -0.7 469,719 - ABZR87_RS18270 0.26 -0.1 469,719 - ABZR87_RS18270 0.26 +0.5 469,788 + ABZR87_RS18270 0.37 +0.1 469,788 + ABZR87_RS18270 0.37 -0.7 469,788 + ABZR87_RS18270 0.37 -0.7 469,788 + ABZR87_RS18270 0.37 +0.0 469,788 + ABZR87_RS18270 0.37 -0.4 469,789 - ABZR87_RS18270 0.37 -1.2 469,789 - ABZR87_RS18270 0.37 -0.9 469,789 - ABZR87_RS18270 0.37 +0.8 469,789 - ABZR87_RS18270 0.37 +2.1 469,789 - ABZR87_RS18270 0.37 +0.4 469,794 + ABZR87_RS18270 0.38 +0.3 469,795 - ABZR87_RS18270 0.38 -0.5 469,837 + ABZR87_RS18270 0.45 -0.1 469,838 - ABZR87_RS18270 0.45 -0.7 470,212 + -0.1 470,212 + +0.5 470,213 - +0.3 470,213 - -0.3 470,352 + -0.1 470,403 + -0.3 470,404 - -0.2
Or see this region's nucleotide sequence