Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16995

Experiment: rhizosphere sample 8; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16985 and ABZR87_RS16990 are separated by 83 nucleotidesABZR87_RS16990 and ABZR87_RS16995 are separated by 5 nucleotidesABZR87_RS16995 and ABZR87_RS17000 are separated by 74 nucleotidesABZR87_RS17000 and ABZR87_RS17005 are separated by 87 nucleotides ABZR87_RS16985: ABZR87_RS16985 - DJ-1/PfpI family protein, at 163,810 to 164,496 _RS16985 ABZR87_RS16990: ABZR87_RS16990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 164,580 to 165,371 _RS16990 ABZR87_RS16995: ABZR87_RS16995 - lysozyme inhibitor LprI family protein, at 165,377 to 165,832 _RS16995 ABZR87_RS17000: ABZR87_RS17000 - DJ-1/PfpI family protein, at 165,907 to 166,509 _RS17000 ABZR87_RS17005: ABZR87_RS17005 - PLP-dependent aminotransferase family protein, at 166,597 to 167,934 _RS17005 Position (kb) 165 166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 164.548 kb on + strandat 164.548 kb on + strandat 164.548 kb on + strandat 164.548 kb on + strandat 164.548 kb on + strandat 164.549 kb on - strandat 164.549 kb on - strandat 164.549 kb on - strandat 164.549 kb on - strandat 164.827 kb on + strand, within ABZR87_RS16990at 164.828 kb on - strand, within ABZR87_RS16990at 164.828 kb on - strand, within ABZR87_RS16990at 165.321 kb on + strandat 165.321 kb on + strandat 165.378 kb on + strandat 165.378 kb on + strandat 165.379 kb on - strandat 165.399 kb on + strandat 165.399 kb on + strandat 165.400 kb on - strandat 165.483 kb on + strand, within ABZR87_RS16995at 165.484 kb on - strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.598 kb on + strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.853 kb on - strandat 165.853 kb on - strandat 165.883 kb on - strandat 165.949 kb on + strandat 165.949 kb on + strandat 165.950 kb on - strandat 165.954 kb on - strandat 165.954 kb on - strandat 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.984 kb on - strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.159 kb on - strand, within ABZR87_RS17000at 166.199 kb on - strand, within ABZR87_RS17000at 166.534 kb on + strandat 166.546 kb on + strandat 166.547 kb on - strandat 166.547 kb on - strandat 166.562 kb on + strandat 166.563 kb on - strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.585 kb on + strandat 166.586 kb on - strandat 166.586 kb on - strandat 166.586 kb on - strandat 166.612 kb on + strandat 166.741 kb on + strand, within ABZR87_RS17005at 166.742 kb on - strand, within ABZR87_RS17005at 166.742 kb on - strand, within ABZR87_RS17005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
remove
164,548 + -0.2
164,548 + -0.1
164,548 + -0.6
164,548 + -1.1
164,548 + +0.1
164,549 - +0.2
164,549 - -0.0
164,549 - +0.1
164,549 - -0.1
164,827 + ABZR87_RS16990 0.31 +0.2
164,828 - ABZR87_RS16990 0.31 -2.6
164,828 - ABZR87_RS16990 0.31 -1.1
165,321 + +0.7
165,321 + +0.2
165,378 + -0.2
165,378 + -0.1
165,379 - -2.3
165,399 + +2.3
165,399 + -0.0
165,400 - -1.5
165,483 + ABZR87_RS16995 0.23 +1.9
165,484 - ABZR87_RS16995 0.23 -1.3
165,594 + ABZR87_RS16995 0.48 -0.1
165,594 + ABZR87_RS16995 0.48 -0.6
165,594 + ABZR87_RS16995 0.48 +0.0
165,594 + ABZR87_RS16995 0.48 -1.3
165,594 + ABZR87_RS16995 0.48 -0.4
165,594 + ABZR87_RS16995 0.48 -0.3
165,594 + ABZR87_RS16995 0.48 -4.6
165,594 + ABZR87_RS16995 0.48 -1.4
165,594 + ABZR87_RS16995 0.48 +0.5
165,595 - ABZR87_RS16995 0.48 +1.1
165,595 - ABZR87_RS16995 0.48 +0.4
165,595 - ABZR87_RS16995 0.48 +1.5
165,595 - ABZR87_RS16995 0.48 -0.5
165,595 - ABZR87_RS16995 0.48 -0.2
165,595 - ABZR87_RS16995 0.48 +0.9
165,595 - ABZR87_RS16995 0.48 +0.1
165,595 - ABZR87_RS16995 0.48 -0.4
165,598 + ABZR87_RS16995 0.48 +0.9
165,599 - ABZR87_RS16995 0.49 -0.6
165,599 - ABZR87_RS16995 0.49 -0.3
165,599 - ABZR87_RS16995 0.49 -1.0
165,599 - ABZR87_RS16995 0.49 +0.7
165,690 + ABZR87_RS16995 0.69 -0.5
165,690 + ABZR87_RS16995 0.69 +1.6
165,690 + ABZR87_RS16995 0.69 +0.6
165,690 + ABZR87_RS16995 0.69 -1.3
165,691 - ABZR87_RS16995 0.69 -0.3
165,691 - ABZR87_RS16995 0.69 +2.3
165,853 - +1.5
165,853 - -0.0
165,883 - -0.5
165,949 + +0.2
165,949 + -1.1
165,950 - +0.8
165,954 - +1.4
165,954 - -0.9
165,983 + ABZR87_RS17000 0.13 +0.4
165,983 + ABZR87_RS17000 0.13 +0.6
165,983 + ABZR87_RS17000 0.13 -0.4
165,984 - ABZR87_RS17000 0.13 +0.6
166,094 + ABZR87_RS17000 0.31 -0.2
166,094 + ABZR87_RS17000 0.31 -0.6
166,094 + ABZR87_RS17000 0.31 +0.8
166,159 - ABZR87_RS17000 0.42 +3.6
166,199 - ABZR87_RS17000 0.48 +0.2
166,534 + -2.3
166,546 + +0.3
166,547 - +1.1
166,547 - +0.6
166,562 + +0.4
166,563 - +0.2
166,582 + -0.1
166,582 + +2.6
166,582 + -0.6
166,582 + +0.8
166,585 + -0.2
166,586 - -0.7
166,586 - +0.4
166,586 - +0.6
166,612 + -0.3
166,741 + ABZR87_RS17005 0.11 -1.5
166,742 - ABZR87_RS17005 0.11 +0.3
166,742 - ABZR87_RS17005 0.11 +0.9

Or see this region's nucleotide sequence