Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16595 and ABZR87_RS16600 are separated by 367 nucleotides ABZR87_RS16600 and ABZR87_RS16605 overlap by 14 nucleotides
ABZR87_RS16595: ABZR87_RS16595 - ABC transporter substrate-binding protein, at 71,621 to 72,754
_RS16595
ABZR87_RS16600: ABZR87_RS16600 - fatty acid desaturase, at 73,122 to 74,096
_RS16600
ABZR87_RS16605: ABZR87_RS16605 - PhnD/SsuA/transferrin family substrate-binding protein, at 74,083 to 74,910
_RS16605
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.174 kb on + strand, within ABZR87_RS16595 at 72.264 kb on + strand, within ABZR87_RS16595 at 72.410 kb on + strand, within ABZR87_RS16595 at 72.410 kb on + strand, within ABZR87_RS16595 at 72.411 kb on - strand, within ABZR87_RS16595 at 72.411 kb on - strand, within ABZR87_RS16595 at 72.429 kb on + strand, within ABZR87_RS16595 at 72.429 kb on + strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.645 kb on + strand at 72.645 kb on + strand at 72.646 kb on - strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.687 kb on + strand at 72.688 kb on - strand at 72.688 kb on - strand at 72.836 kb on + strand at 72.837 kb on - strand at 72.851 kb on + strand at 72.851 kb on + strand at 72.852 kb on - strand at 72.852 kb on - strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.883 kb on + strand at 72.884 kb on - strand at 72.884 kb on - strand at 72.884 kb on - strand at 72.884 kb on - strand at 72.916 kb on + strand at 72.917 kb on - strand at 72.917 kb on - strand at 73.038 kb on + strand at 73.038 kb on + strand at 73.038 kb on + strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.039 kb on - strand at 73.084 kb on + strand at 73.085 kb on - strand at 73.085 kb on - strand at 73.131 kb on + strand at 73.131 kb on + strand at 73.131 kb on + strand at 73.131 kb on + strand at 73.132 kb on - strand at 73.228 kb on - strand, within ABZR87_RS16600 at 73.228 kb on - strand, within ABZR87_RS16600 at 73.244 kb on + strand, within ABZR87_RS16600 at 73.314 kb on + strand, within ABZR87_RS16600 at 73.314 kb on + strand, within ABZR87_RS16600 at 73.315 kb on - strand, within ABZR87_RS16600 at 73.414 kb on - strand, within ABZR87_RS16600 at 73.414 kb on - strand, within ABZR87_RS16600 at 73.488 kb on + strand, within ABZR87_RS16600 at 73.488 kb on + strand, within ABZR87_RS16600 at 73.488 kb on + strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.489 kb on - strand, within ABZR87_RS16600 at 73.513 kb on - strand, within ABZR87_RS16600 at 73.542 kb on + strand, within ABZR87_RS16600 at 73.542 kb on + strand, within ABZR87_RS16600 at 73.542 kb on + strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.543 kb on - strand, within ABZR87_RS16600 at 73.557 kb on - strand, within ABZR87_RS16600 at 73.881 kb on + strand, within ABZR87_RS16600 at 73.881 kb on + strand, within ABZR87_RS16600 at 73.881 kb on + strand, within ABZR87_RS16600 at 73.881 kb on + strand, within ABZR87_RS16600 at 73.882 kb on - strand, within ABZR87_RS16600 at 73.882 kb on - strand, within ABZR87_RS16600 at 73.882 kb on - strand, within ABZR87_RS16600 at 73.882 kb on - strand, within ABZR87_RS16600 at 73.882 kb on - strand, within ABZR87_RS16600 at 73.938 kb on + strand, within ABZR87_RS16600 at 73.959 kb on + strand, within ABZR87_RS16600 at 73.960 kb on - strand, within ABZR87_RS16600 at 73.960 kb on - strand, within ABZR87_RS16600 at 74.017 kb on - strand at 74.122 kb on + strand at 74.122 kb on + strand at 74.123 kb on - strand at 74.123 kb on - strand at 74.158 kb on - strand at 74.383 kb on + strand, within ABZR87_RS16605 at 74.383 kb on + strand, within ABZR87_RS16605 at 74.384 kb on - strand, within ABZR87_RS16605 at 74.384 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605 at 74.386 kb on - strand, within ABZR87_RS16605
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 72,174 + ABZR87_RS16595 0.49 -0.9 72,264 + ABZR87_RS16595 0.57 +1.5 72,410 + ABZR87_RS16595 0.70 +0.4 72,410 + ABZR87_RS16595 0.70 +0.5 72,411 - ABZR87_RS16595 0.70 -0.7 72,411 - ABZR87_RS16595 0.70 -0.3 72,429 + ABZR87_RS16595 0.71 -0.3 72,429 + ABZR87_RS16595 0.71 -0.2 72,430 - ABZR87_RS16595 0.71 +2.0 72,430 - ABZR87_RS16595 0.71 -1.0 72,430 - ABZR87_RS16595 0.71 -0.1 72,561 + ABZR87_RS16595 0.83 +0.1 72,561 + ABZR87_RS16595 0.83 -1.8 72,561 + ABZR87_RS16595 0.83 -0.5 72,561 + ABZR87_RS16595 0.83 +0.1 72,561 + ABZR87_RS16595 0.83 -0.7 72,561 + ABZR87_RS16595 0.83 +1.1 72,562 - ABZR87_RS16595 0.83 -0.2 72,562 - ABZR87_RS16595 0.83 +0.1 72,562 - ABZR87_RS16595 0.83 -1.0 72,562 - ABZR87_RS16595 0.83 -2.0 72,645 + -0.3 72,645 + +0.6 72,646 - +0.8 72,687 + -0.7 72,687 + -0.1 72,687 + -0.6 72,687 + +0.4 72,687 + +0.1 72,688 - +0.5 72,688 - -0.3 72,836 + -1.2 72,837 - -0.8 72,851 + -0.0 72,851 + -0.6 72,852 - +0.4 72,852 - -1.1 72,883 + +0.2 72,883 + -1.5 72,883 + +0.8 72,883 + -0.1 72,883 + +1.2 72,883 + -0.4 72,883 + -1.9 72,883 + +0.6 72,884 - -0.3 72,884 - -0.6 72,884 - -1.8 72,884 - -0.7 72,916 + -0.0 72,917 - -0.2 72,917 - -1.0 73,038 + +0.1 73,038 + -1.5 73,038 + +0.7 73,039 - +0.7 73,039 - -0.9 73,039 - -0.2 73,039 - -1.8 73,039 - -1.3 73,039 - +1.2 73,039 - -0.2 73,039 - -0.2 73,039 - +0.2 73,039 - +0.8 73,084 + -0.9 73,085 - -0.9 73,085 - +1.0 73,131 + +1.2 73,131 + +0.6 73,131 + -0.5 73,131 + -0.9 73,132 - -0.9 73,228 - ABZR87_RS16600 0.11 -0.6 73,228 - ABZR87_RS16600 0.11 -0.3 73,244 + ABZR87_RS16600 0.13 +0.5 73,314 + ABZR87_RS16600 0.20 -1.0 73,314 + ABZR87_RS16600 0.20 -0.8 73,315 - ABZR87_RS16600 0.20 +0.2 73,414 - ABZR87_RS16600 0.30 -1.5 73,414 - ABZR87_RS16600 0.30 +0.1 73,488 + ABZR87_RS16600 0.38 -0.4 73,488 + ABZR87_RS16600 0.38 -0.6 73,488 + ABZR87_RS16600 0.38 +0.7 73,489 - ABZR87_RS16600 0.38 +1.3 73,489 - ABZR87_RS16600 0.38 +0.1 73,489 - ABZR87_RS16600 0.38 +0.7 73,489 - ABZR87_RS16600 0.38 +1.3 73,489 - ABZR87_RS16600 0.38 -1.1 73,513 - ABZR87_RS16600 0.40 -0.5 73,542 + ABZR87_RS16600 0.43 +0.6 73,542 + ABZR87_RS16600 0.43 -0.8 73,542 + ABZR87_RS16600 0.43 +0.3 73,543 - ABZR87_RS16600 0.43 -0.3 73,543 - ABZR87_RS16600 0.43 +0.9 73,543 - ABZR87_RS16600 0.43 +2.4 73,543 - ABZR87_RS16600 0.43 +0.2 73,557 - ABZR87_RS16600 0.45 +0.1 73,881 + ABZR87_RS16600 0.78 +1.6 73,881 + ABZR87_RS16600 0.78 -0.3 73,881 + ABZR87_RS16600 0.78 -1.6 73,881 + ABZR87_RS16600 0.78 +1.5 73,882 - ABZR87_RS16600 0.78 +0.1 73,882 - ABZR87_RS16600 0.78 +0.8 73,882 - ABZR87_RS16600 0.78 +1.6 73,882 - ABZR87_RS16600 0.78 -0.7 73,882 - ABZR87_RS16600 0.78 +0.0 73,938 + ABZR87_RS16600 0.84 +0.2 73,959 + ABZR87_RS16600 0.86 +0.1 73,960 - ABZR87_RS16600 0.86 +1.9 73,960 - ABZR87_RS16600 0.86 +0.4 74,017 - -0.6 74,122 + -1.4 74,122 + +0.2 74,123 - -0.1 74,123 - +0.1 74,158 - -0.8 74,383 + ABZR87_RS16605 0.36 -0.4 74,383 + ABZR87_RS16605 0.36 -0.1 74,384 - ABZR87_RS16605 0.36 -1.9 74,384 - ABZR87_RS16605 0.36 +0.5 74,386 - ABZR87_RS16605 0.37 -1.3 74,386 - ABZR87_RS16605 0.37 +0.1 74,386 - ABZR87_RS16605 0.37 -0.7 74,386 - ABZR87_RS16605 0.37 +0.1 74,386 - ABZR87_RS16605 0.37 -0.9 74,386 - ABZR87_RS16605 0.37 -1.4 74,386 - ABZR87_RS16605 0.37 -1.0
Or see this region's nucleotide sequence