Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15410 and ABZR87_RS15415 are separated by 156 nucleotides ABZR87_RS15415 and ABZR87_RS15420 overlap by 4 nucleotides ABZR87_RS15420 and ABZR87_RS15425 are separated by 72 nucleotides
ABZR87_RS15410: ABZR87_RS15410 - phosphoribosylamine--glycine ligase, at 3,243,353 to 3,244,621
_RS15410
ABZR87_RS15415: ABZR87_RS15415 - oxygen-dependent coproporphyrinogen oxidase, at 3,244,778 to 3,245,686
_RS15415
ABZR87_RS15420: ABZR87_RS15420 - nicotinate-nucleotide adenylyltransferase, at 3,245,683 to 3,246,393
_RS15420
ABZR87_RS15425: ABZR87_RS15425 - ribosome silencing factor, at 3,246,466 to 3,247,107
_RS15425
Position (kb) 3244
3245
3246 Strain fitness (log2 ratio) -1
0
1 at 3244.375 kb on + strand, within ABZR87_RS15410 at 3244.714 kb on + strand at 3244.714 kb on + strand at 3244.715 kb on - strand at 3244.715 kb on - strand at 3244.731 kb on + strand at 3244.731 kb on + strand at 3244.731 kb on + strand at 3244.731 kb on + strand at 3245.682 kb on + strand at 3245.682 kb on + strand at 3245.683 kb on - strand at 3246.465 kb on + strand at 3246.465 kb on + strand at 3246.466 kb on - strand at 3246.470 kb on - strand at 3246.471 kb on + strand at 3246.472 kb on - strand at 3246.482 kb on + strand at 3246.543 kb on + strand, within ABZR87_RS15425 at 3246.543 kb on + strand, within ABZR87_RS15425 at 3246.543 kb on + strand, within ABZR87_RS15425 at 3246.544 kb on - strand, within ABZR87_RS15425 at 3246.544 kb on - strand, within ABZR87_RS15425 at 3246.544 kb on - strand, within ABZR87_RS15425
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 3,244,375 + ABZR87_RS15410 0.81 +0.5 3,244,714 + +0.7 3,244,714 + -0.3 3,244,715 - +1.0 3,244,715 - +0.1 3,244,731 + -0.6 3,244,731 + +0.7 3,244,731 + +0.2 3,244,731 + -1.0 3,245,682 + -0.3 3,245,682 + +0.4 3,245,683 - -1.1 3,246,465 + -0.3 3,246,465 + -0.4 3,246,466 - -0.2 3,246,470 - +1.1 3,246,471 + +0.6 3,246,472 - +1.0 3,246,482 + +1.7 3,246,543 + ABZR87_RS15425 0.12 -1.2 3,246,543 + ABZR87_RS15425 0.12 +0.0 3,246,543 + ABZR87_RS15425 0.12 +0.5 3,246,544 - ABZR87_RS15425 0.12 -0.1 3,246,544 - ABZR87_RS15425 0.12 -1.3 3,246,544 - ABZR87_RS15425 0.12 +0.1
Or see this region's nucleotide sequence