Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06510

Experiment: rhizosphere sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06500 and ABZR87_RS06505 are separated by 101 nucleotidesABZR87_RS06505 and ABZR87_RS06510 overlap by 4 nucleotidesABZR87_RS06510 and ABZR87_RS06515 are separated by 187 nucleotides ABZR87_RS06500: ABZR87_RS06500 - SPOR domain-containing protein, at 1,383,584 to 1,384,357 _RS06500 ABZR87_RS06505: ABZR87_RS06505 - type III pantothenate kinase, at 1,384,459 to 1,385,340 _RS06505 ABZR87_RS06510: ABZR87_RS06510 - biotin--[acetyl-CoA-carboxylase] ligase, at 1,385,337 to 1,386,218 _RS06510 ABZR87_RS06515: ABZR87_RS06515 - ABC transporter permease, at 1,386,406 to 1,387,530 _RS06515 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -2 -1 0 1 2at 1384.420 kb on + strandat 1384.421 kb on - strandat 1384.460 kb on + strandat 1384.461 kb on - strandat 1386.171 kb on - strandat 1386.218 kb on + strandat 1386.218 kb on + strandat 1386.218 kb on + strandat 1386.218 kb on + strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.262 kb on + strandat 1386.262 kb on + strandat 1386.263 kb on - strandat 1386.263 kb on - strandat 1386.363 kb on - strandat 1386.393 kb on + strandat 1386.393 kb on + strandat 1386.394 kb on - strandat 1386.420 kb on + strandat 1386.420 kb on + strandat 1386.420 kb on + strandat 1386.420 kb on + strandat 1386.420 kb on + strandat 1386.420 kb on + strandat 1386.421 kb on - strandat 1386.421 kb on - strandat 1386.421 kb on - strandat 1386.421 kb on - strandat 1386.421 kb on - strandat 1386.421 kb on - strandat 1386.889 kb on + strand, within ABZR87_RS06515at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.902 kb on - strand, within ABZR87_RS06515at 1386.958 kb on + strand, within ABZR87_RS06515at 1386.958 kb on + strand, within ABZR87_RS06515at 1386.959 kb on - strand, within ABZR87_RS06515at 1387.011 kb on + strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
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1,384,420 + -1.0
1,384,421 - +1.0
1,384,460 + -0.7
1,384,461 - +1.2
1,386,171 - -1.3
1,386,218 + +1.8
1,386,218 + -0.2
1,386,218 + +1.1
1,386,218 + +2.1
1,386,219 - -0.1
1,386,219 - +0.9
1,386,219 - -0.3
1,386,219 - +1.1
1,386,219 - -1.4
1,386,219 - -0.5
1,386,219 - +0.2
1,386,262 + +0.4
1,386,262 + +0.1
1,386,263 - +0.2
1,386,263 - +1.5
1,386,363 - -0.4
1,386,393 + -1.5
1,386,393 + -0.1
1,386,394 - +0.8
1,386,420 + -0.0
1,386,420 + -0.4
1,386,420 + +0.3
1,386,420 + -0.6
1,386,420 + -1.2
1,386,420 + -0.8
1,386,421 - +0.0
1,386,421 - -0.3
1,386,421 - -0.0
1,386,421 - +2.3
1,386,421 - +1.0
1,386,421 - +0.3
1,386,889 + ABZR87_RS06515 0.43 -0.8
1,386,889 + ABZR87_RS06515 0.43 +0.5
1,386,889 + ABZR87_RS06515 0.43 -2.0
1,386,889 + ABZR87_RS06515 0.43 -0.4
1,386,890 - ABZR87_RS06515 0.43 -1.2
1,386,890 - ABZR87_RS06515 0.43 +1.1
1,386,890 - ABZR87_RS06515 0.43 +0.6
1,386,890 - ABZR87_RS06515 0.43 +0.9
1,386,902 - ABZR87_RS06515 0.44 +0.6
1,386,958 + ABZR87_RS06515 0.49 -1.5
1,386,958 + ABZR87_RS06515 0.49 +0.4
1,386,959 - ABZR87_RS06515 0.49 +1.8
1,387,011 + ABZR87_RS06515 0.54 +0.6
1,387,012 - ABZR87_RS06515 0.54 +0.7
1,387,012 - ABZR87_RS06515 0.54 -0.6
1,387,012 - ABZR87_RS06515 0.54 -0.4
1,387,012 - ABZR87_RS06515 0.54 -1.6

Or see this region's nucleotide sequence