Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06030

Experiment: rhizosphere sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06025 and ABZR87_RS06030 are separated by 108 nucleotidesABZR87_RS06030 and ABZR87_RS06035 are separated by 174 nucleotidesABZR87_RS06035 and ABZR87_RS06040 are separated by 84 nucleotides ABZR87_RS06025: ABZR87_RS06025 - DMT family transporter, at 1,285,070 to 1,286,050 _RS06025 ABZR87_RS06030: ABZR87_RS06030 - AraC family transcriptional regulator, at 1,286,159 to 1,286,881 _RS06030 ABZR87_RS06035: ABZR87_RS06035 - DUF427 domain-containing protein, at 1,287,056 to 1,287,412 _RS06035 ABZR87_RS06040: ABZR87_RS06040 - ammonium transporter, at 1,287,497 to 1,288,699 _RS06040 Position (kb) 1286 1287Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1285.159 kb on - strandat 1285.159 kb on - strandat 1285.170 kb on + strand, within ABZR87_RS06025at 1285.170 kb on + strand, within ABZR87_RS06025at 1285.170 kb on + strand, within ABZR87_RS06025at 1285.170 kb on + strand, within ABZR87_RS06025at 1285.170 kb on + strand, within ABZR87_RS06025at 1285.170 kb on + strand, within ABZR87_RS06025at 1285.171 kb on - strand, within ABZR87_RS06025at 1285.171 kb on - strand, within ABZR87_RS06025at 1285.171 kb on - strand, within ABZR87_RS06025at 1285.291 kb on + strand, within ABZR87_RS06025at 1285.291 kb on + strand, within ABZR87_RS06025at 1285.291 kb on + strand, within ABZR87_RS06025at 1285.292 kb on - strand, within ABZR87_RS06025at 1285.292 kb on - strand, within ABZR87_RS06025at 1285.458 kb on + strand, within ABZR87_RS06025at 1285.479 kb on + strand, within ABZR87_RS06025at 1285.479 kb on + strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.480 kb on - strand, within ABZR87_RS06025at 1285.515 kb on - strand, within ABZR87_RS06025at 1285.530 kb on + strand, within ABZR87_RS06025at 1285.531 kb on - strand, within ABZR87_RS06025at 1285.531 kb on - strand, within ABZR87_RS06025at 1285.531 kb on - strand, within ABZR87_RS06025at 1285.531 kb on - strand, within ABZR87_RS06025at 1285.531 kb on - strand, within ABZR87_RS06025at 1285.531 kb on - strand, within ABZR87_RS06025at 1285.575 kb on + strand, within ABZR87_RS06025at 1285.575 kb on + strand, within ABZR87_RS06025at 1285.576 kb on - strand, within ABZR87_RS06025at 1285.746 kb on + strand, within ABZR87_RS06025at 1285.746 kb on + strand, within ABZR87_RS06025at 1285.746 kb on + strand, within ABZR87_RS06025at 1285.747 kb on - strand, within ABZR87_RS06025at 1285.747 kb on - strand, within ABZR87_RS06025at 1285.749 kb on + strand, within ABZR87_RS06025at 1285.749 kb on + strand, within ABZR87_RS06025at 1285.749 kb on + strand, within ABZR87_RS06025at 1285.749 kb on + strand, within ABZR87_RS06025at 1285.750 kb on - strand, within ABZR87_RS06025at 1285.750 kb on - strand, within ABZR87_RS06025at 1285.750 kb on - strand, within ABZR87_RS06025at 1285.864 kb on - strand, within ABZR87_RS06025at 1285.872 kb on + strand, within ABZR87_RS06025at 1285.873 kb on - strand, within ABZR87_RS06025at 1285.873 kb on - strand, within ABZR87_RS06025at 1286.229 kb on + strandat 1286.229 kb on + strandat 1286.230 kb on - strandat 1286.230 kb on - strandat 1286.230 kb on - strandat 1286.230 kb on - strandat 1286.341 kb on - strand, within ABZR87_RS06030at 1286.862 kb on + strandat 1286.862 kb on + strandat 1286.862 kb on + strandat 1286.862 kb on + strandat 1286.863 kb on - strandat 1286.863 kb on - strandat 1286.863 kb on - strandat 1286.896 kb on + strandat 1286.897 kb on - strandat 1286.897 kb on - strandat 1286.897 kb on - strandat 1286.897 kb on - strandat 1286.921 kb on + strandat 1287.087 kb on + strandat 1287.088 kb on - strandat 1287.099 kb on + strand, within ABZR87_RS06035at 1287.138 kb on + strand, within ABZR87_RS06035at 1287.138 kb on + strand, within ABZR87_RS06035at 1287.186 kb on + strand, within ABZR87_RS06035at 1287.186 kb on + strand, within ABZR87_RS06035at 1287.187 kb on - strand, within ABZR87_RS06035at 1287.187 kb on - strand, within ABZR87_RS06035at 1287.189 kb on + strand, within ABZR87_RS06035at 1287.189 kb on + strand, within ABZR87_RS06035at 1287.189 kb on + strand, within ABZR87_RS06035at 1287.190 kb on - strand, within ABZR87_RS06035at 1287.190 kb on - strand, within ABZR87_RS06035at 1287.190 kb on - strand, within ABZR87_RS06035at 1287.207 kb on + strand, within ABZR87_RS06035at 1287.207 kb on + strand, within ABZR87_RS06035at 1287.207 kb on + strand, within ABZR87_RS06035at 1287.207 kb on + strand, within ABZR87_RS06035at 1287.208 kb on - strand, within ABZR87_RS06035at 1287.208 kb on - strand, within ABZR87_RS06035at 1287.208 kb on - strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.273 kb on + strand, within ABZR87_RS06035at 1287.274 kb on - strand, within ABZR87_RS06035at 1287.274 kb on - strand, within ABZR87_RS06035at 1287.274 kb on - strand, within ABZR87_RS06035at 1287.274 kb on - strand, within ABZR87_RS06035at 1287.274 kb on - strand, within ABZR87_RS06035at 1287.274 kb on - strand, within ABZR87_RS06035at 1287.454 kb on + strandat 1287.454 kb on + strandat 1287.454 kb on + strandat 1287.454 kb on + strandat 1287.499 kb on - strandat 1287.499 kb on - strandat 1287.499 kb on - strandat 1287.499 kb on - strandat 1287.612 kb on + strandat 1287.612 kb on + strandat 1287.613 kb on - strandat 1287.613 kb on - strandat 1287.613 kb on - strandat 1287.613 kb on - strandat 1287.613 kb on - strandat 1287.815 kb on - strand, within ABZR87_RS06040

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
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1,285,159 - +0.7
1,285,159 - -0.4
1,285,170 + ABZR87_RS06025 0.10 +0.5
1,285,170 + ABZR87_RS06025 0.10 +0.7
1,285,170 + ABZR87_RS06025 0.10 +0.2
1,285,170 + ABZR87_RS06025 0.10 -1.1
1,285,170 + ABZR87_RS06025 0.10 -1.0
1,285,170 + ABZR87_RS06025 0.10 -0.0
1,285,171 - ABZR87_RS06025 0.10 +0.3
1,285,171 - ABZR87_RS06025 0.10 +0.6
1,285,171 - ABZR87_RS06025 0.10 +0.3
1,285,291 + ABZR87_RS06025 0.23 +0.7
1,285,291 + ABZR87_RS06025 0.23 +1.2
1,285,291 + ABZR87_RS06025 0.23 -1.2
1,285,292 - ABZR87_RS06025 0.23 +1.9
1,285,292 - ABZR87_RS06025 0.23 -1.3
1,285,458 + ABZR87_RS06025 0.40 +0.9
1,285,479 + ABZR87_RS06025 0.42 +0.9
1,285,479 + ABZR87_RS06025 0.42 +0.6
1,285,480 - ABZR87_RS06025 0.42 -1.1
1,285,480 - ABZR87_RS06025 0.42 +1.5
1,285,480 - ABZR87_RS06025 0.42 +0.0
1,285,480 - ABZR87_RS06025 0.42 -1.3
1,285,480 - ABZR87_RS06025 0.42 +0.5
1,285,480 - ABZR87_RS06025 0.42 -0.9
1,285,480 - ABZR87_RS06025 0.42 +1.2
1,285,515 - ABZR87_RS06025 0.45 -0.0
1,285,530 + ABZR87_RS06025 0.47 +0.2
1,285,531 - ABZR87_RS06025 0.47 -0.1
1,285,531 - ABZR87_RS06025 0.47 +1.8
1,285,531 - ABZR87_RS06025 0.47 -0.4
1,285,531 - ABZR87_RS06025 0.47 +0.4
1,285,531 - ABZR87_RS06025 0.47 +0.2
1,285,531 - ABZR87_RS06025 0.47 -1.3
1,285,575 + ABZR87_RS06025 0.51 +0.3
1,285,575 + ABZR87_RS06025 0.51 +0.1
1,285,576 - ABZR87_RS06025 0.52 -0.3
1,285,746 + ABZR87_RS06025 0.69 -0.1
1,285,746 + ABZR87_RS06025 0.69 -0.4
1,285,746 + ABZR87_RS06025 0.69 +0.3
1,285,747 - ABZR87_RS06025 0.69 +0.1
1,285,747 - ABZR87_RS06025 0.69 +0.7
1,285,749 + ABZR87_RS06025 0.69 -0.1
1,285,749 + ABZR87_RS06025 0.69 -0.1
1,285,749 + ABZR87_RS06025 0.69 -1.2
1,285,749 + ABZR87_RS06025 0.69 +0.2
1,285,750 - ABZR87_RS06025 0.69 -1.0
1,285,750 - ABZR87_RS06025 0.69 +1.0
1,285,750 - ABZR87_RS06025 0.69 +0.3
1,285,864 - ABZR87_RS06025 0.81 +0.0
1,285,872 + ABZR87_RS06025 0.82 -0.2
1,285,873 - ABZR87_RS06025 0.82 +0.9
1,285,873 - ABZR87_RS06025 0.82 -0.5
1,286,229 + +0.3
1,286,229 + -1.5
1,286,230 - -0.2
1,286,230 - -0.2
1,286,230 - -0.3
1,286,230 - -0.4
1,286,341 - ABZR87_RS06030 0.25 -1.4
1,286,862 + +0.0
1,286,862 + +1.0
1,286,862 + -0.4
1,286,862 + -1.3
1,286,863 - -0.7
1,286,863 - -1.0
1,286,863 - +0.2
1,286,896 + +0.5
1,286,897 - +0.4
1,286,897 - -0.9
1,286,897 - +1.1
1,286,897 - -0.4
1,286,921 + -0.7
1,287,087 + +0.8
1,287,088 - +0.7
1,287,099 + ABZR87_RS06035 0.12 -0.5
1,287,138 + ABZR87_RS06035 0.23 +1.3
1,287,138 + ABZR87_RS06035 0.23 +0.1
1,287,186 + ABZR87_RS06035 0.36 -1.8
1,287,186 + ABZR87_RS06035 0.36 -0.3
1,287,187 - ABZR87_RS06035 0.37 -0.8
1,287,187 - ABZR87_RS06035 0.37 +0.2
1,287,189 + ABZR87_RS06035 0.37 +0.2
1,287,189 + ABZR87_RS06035 0.37 -0.5
1,287,189 + ABZR87_RS06035 0.37 +0.2
1,287,190 - ABZR87_RS06035 0.38 -1.0
1,287,190 - ABZR87_RS06035 0.38 +0.6
1,287,190 - ABZR87_RS06035 0.38 -0.2
1,287,207 + ABZR87_RS06035 0.42 -0.1
1,287,207 + ABZR87_RS06035 0.42 +0.6
1,287,207 + ABZR87_RS06035 0.42 +0.3
1,287,207 + ABZR87_RS06035 0.42 +0.9
1,287,208 - ABZR87_RS06035 0.43 -0.1
1,287,208 - ABZR87_RS06035 0.43 +0.1
1,287,208 - ABZR87_RS06035 0.43 +0.8
1,287,273 + ABZR87_RS06035 0.61 +1.3
1,287,273 + ABZR87_RS06035 0.61 -0.1
1,287,273 + ABZR87_RS06035 0.61 +0.8
1,287,273 + ABZR87_RS06035 0.61 -0.4
1,287,273 + ABZR87_RS06035 0.61 +0.7
1,287,273 + ABZR87_RS06035 0.61 -1.3
1,287,273 + ABZR87_RS06035 0.61 -0.3
1,287,273 + ABZR87_RS06035 0.61 -1.2
1,287,273 + ABZR87_RS06035 0.61 +0.9
1,287,273 + ABZR87_RS06035 0.61 +0.1
1,287,273 + ABZR87_RS06035 0.61 -0.3
1,287,274 - ABZR87_RS06035 0.61 -0.2
1,287,274 - ABZR87_RS06035 0.61 -0.2
1,287,274 - ABZR87_RS06035 0.61 -0.6
1,287,274 - ABZR87_RS06035 0.61 -1.0
1,287,274 - ABZR87_RS06035 0.61 -3.0
1,287,274 - ABZR87_RS06035 0.61 -0.4
1,287,454 + +0.3
1,287,454 + -0.1
1,287,454 + +0.9
1,287,454 + -0.7
1,287,499 - +0.9
1,287,499 - +0.2
1,287,499 - -0.2
1,287,499 - -0.6
1,287,612 + -0.4
1,287,612 + +0.8
1,287,613 - -0.2
1,287,613 - -1.3
1,287,613 - -0.7
1,287,613 - +1.1
1,287,613 - -0.2
1,287,815 - ABZR87_RS06040 0.26 +1.6

Or see this region's nucleotide sequence