Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05470

Experiment: rhizosphere sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05460 and ABZR87_RS05465 overlap by 4 nucleotidesABZR87_RS05465 and ABZR87_RS05470 overlap by 14 nucleotidesABZR87_RS05470 and ABZR87_RS05475 are separated by 309 nucleotidesABZR87_RS05475 and ABZR87_RS05480 are separated by 288 nucleotides ABZR87_RS05460: ABZR87_RS05460 - amino acid ABC transporter permease, at 1,161,139 to 1,161,873 _RS05460 ABZR87_RS05465: ABZR87_RS05465 - amino acid ABC transporter permease, at 1,161,870 to 1,162,523 _RS05465 ABZR87_RS05470: ABZR87_RS05470 - amino acid ABC transporter ATP-binding protein, at 1,162,510 to 1,163,247 _RS05470 ABZR87_RS05475: ABZR87_RS05475 - fucose-binding lectin protein, at 1,163,557 to 1,163,832 _RS05475 ABZR87_RS05480: ABZR87_RS05480 - bestrophin family ion channel, at 1,164,121 to 1,165,056 _RS05480 Position (kb) 1162 1163 1164Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1161.710 kb on - strand, within ABZR87_RS05460at 1161.730 kb on + strand, within ABZR87_RS05460at 1161.731 kb on - strand, within ABZR87_RS05460at 1161.731 kb on - strand, within ABZR87_RS05460at 1161.731 kb on - strand, within ABZR87_RS05460at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.038 kb on + strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.039 kb on - strand, within ABZR87_RS05465at 1162.158 kb on + strand, within ABZR87_RS05465at 1162.158 kb on + strand, within ABZR87_RS05465at 1162.158 kb on + strand, within ABZR87_RS05465at 1162.159 kb on - strand, within ABZR87_RS05465at 1162.159 kb on - strand, within ABZR87_RS05465at 1162.171 kb on - strand, within ABZR87_RS05465at 1162.171 kb on - strand, within ABZR87_RS05465at 1162.251 kb on + strand, within ABZR87_RS05465at 1162.252 kb on - strand, within ABZR87_RS05465at 1162.252 kb on - strand, within ABZR87_RS05465at 1162.427 kb on + strand, within ABZR87_RS05465at 1162.427 kb on + strand, within ABZR87_RS05465at 1162.427 kb on + strand, within ABZR87_RS05465at 1162.427 kb on + strand, within ABZR87_RS05465at 1162.427 kb on + strand, within ABZR87_RS05465at 1162.427 kb on + strand, within ABZR87_RS05465at 1162.428 kb on - strand, within ABZR87_RS05465at 1162.428 kb on - strand, within ABZR87_RS05465at 1162.428 kb on - strand, within ABZR87_RS05465at 1162.431 kb on + strand, within ABZR87_RS05465at 1162.431 kb on + strand, within ABZR87_RS05465at 1162.452 kb on + strand, within ABZR87_RS05465at 1162.452 kb on + strand, within ABZR87_RS05465at 1162.452 kb on + strand, within ABZR87_RS05465at 1162.452 kb on + strand, within ABZR87_RS05465at 1162.453 kb on - strand, within ABZR87_RS05465at 1162.483 kb on - strandat 1162.483 kb on - strandat 1162.483 kb on - strandat 1162.483 kb on - strandat 1162.483 kb on - strandat 1162.509 kb on + strandat 1162.509 kb on + strandat 1162.509 kb on + strandat 1162.510 kb on - strandat 1162.510 kb on - strandat 1162.535 kb on + strandat 1162.535 kb on + strandat 1162.546 kb on + strandat 1162.546 kb on + strandat 1162.547 kb on - strandat 1162.547 kb on - strandat 1162.907 kb on + strand, within ABZR87_RS05470at 1162.908 kb on + strand, within ABZR87_RS05470at 1162.921 kb on + strand, within ABZR87_RS05470at 1162.921 kb on + strand, within ABZR87_RS05470at 1162.922 kb on - strand, within ABZR87_RS05470at 1163.276 kb on + strandat 1163.276 kb on + strandat 1163.277 kb on - strandat 1163.277 kb on - strandat 1163.277 kb on - strandat 1163.311 kb on + strandat 1163.311 kb on + strandat 1163.401 kb on - strandat 1163.401 kb on - strandat 1163.401 kb on - strandat 1163.427 kb on - strandat 1163.427 kb on - strandat 1163.427 kb on - strandat 1163.459 kb on + strandat 1163.459 kb on + strandat 1163.460 kb on - strandat 1163.488 kb on + strandat 1163.488 kb on + strandat 1163.491 kb on + strandat 1163.492 kb on - strandat 1163.492 kb on - strandat 1163.518 kb on + strandat 1163.552 kb on - strandat 1163.552 kb on - strandat 1163.614 kb on + strand, within ABZR87_RS05475at 1163.614 kb on + strand, within ABZR87_RS05475at 1163.615 kb on - strand, within ABZR87_RS05475at 1163.615 kb on - strand, within ABZR87_RS05475at 1163.615 kb on - strand, within ABZR87_RS05475at 1163.615 kb on - strand, within ABZR87_RS05475at 1163.615 kb on - strand, within ABZR87_RS05475at 1163.615 kb on - strand, within ABZR87_RS05475at 1163.650 kb on + strand, within ABZR87_RS05475at 1163.650 kb on + strand, within ABZR87_RS05475at 1163.650 kb on + strand, within ABZR87_RS05475at 1163.650 kb on + strand, within ABZR87_RS05475at 1163.651 kb on - strand, within ABZR87_RS05475at 1163.651 kb on - strand, within ABZR87_RS05475at 1163.651 kb on - strand, within ABZR87_RS05475at 1163.651 kb on - strand, within ABZR87_RS05475at 1163.651 kb on - strand, within ABZR87_RS05475at 1163.668 kb on + strand, within ABZR87_RS05475at 1163.668 kb on + strand, within ABZR87_RS05475at 1163.668 kb on + strand, within ABZR87_RS05475at 1163.668 kb on + strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.669 kb on - strand, within ABZR87_RS05475at 1163.698 kb on - strand, within ABZR87_RS05475at 1163.749 kb on + strand, within ABZR87_RS05475at 1163.750 kb on + strand, within ABZR87_RS05475at 1163.750 kb on - strand, within ABZR87_RS05475at 1163.750 kb on - strand, within ABZR87_RS05475at 1163.750 kb on - strand, within ABZR87_RS05475at 1163.769 kb on + strand, within ABZR87_RS05475at 1163.770 kb on - strand, within ABZR87_RS05475at 1163.770 kb on - strand, within ABZR87_RS05475at 1163.770 kb on - strand, within ABZR87_RS05475at 1163.815 kb on + strandat 1163.816 kb on - strandat 1163.817 kb on + strandat 1163.835 kb on + strandat 1163.924 kb on + strandat 1163.990 kb on - strandat 1164.043 kb on + strandat 1164.044 kb on - strandat 1164.044 kb on - strandat 1164.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB
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1,161,710 - ABZR87_RS05460 0.78 +0.3
1,161,730 + ABZR87_RS05460 0.80 +0.5
1,161,731 - ABZR87_RS05460 0.81 -0.6
1,161,731 - ABZR87_RS05460 0.81 -1.1
1,161,731 - ABZR87_RS05460 0.81 -0.4
1,162,038 + ABZR87_RS05465 0.26 -0.0
1,162,038 + ABZR87_RS05465 0.26 +1.5
1,162,038 + ABZR87_RS05465 0.26 +0.3
1,162,038 + ABZR87_RS05465 0.26 -0.2
1,162,038 + ABZR87_RS05465 0.26 -0.4
1,162,038 + ABZR87_RS05465 0.26 -0.6
1,162,038 + ABZR87_RS05465 0.26 -0.5
1,162,038 + ABZR87_RS05465 0.26 +0.4
1,162,038 + ABZR87_RS05465 0.26 -0.7
1,162,039 - ABZR87_RS05465 0.26 -0.4
1,162,039 - ABZR87_RS05465 0.26 +0.5
1,162,039 - ABZR87_RS05465 0.26 -0.4
1,162,039 - ABZR87_RS05465 0.26 +0.5
1,162,039 - ABZR87_RS05465 0.26 -0.3
1,162,039 - ABZR87_RS05465 0.26 +1.1
1,162,039 - ABZR87_RS05465 0.26 -0.5
1,162,039 - ABZR87_RS05465 0.26 +0.0
1,162,039 - ABZR87_RS05465 0.26 +0.4
1,162,039 - ABZR87_RS05465 0.26 +1.2
1,162,158 + ABZR87_RS05465 0.44 +0.1
1,162,158 + ABZR87_RS05465 0.44 +0.2
1,162,158 + ABZR87_RS05465 0.44 +0.4
1,162,159 - ABZR87_RS05465 0.44 -0.3
1,162,159 - ABZR87_RS05465 0.44 -0.8
1,162,171 - ABZR87_RS05465 0.46 +0.6
1,162,171 - ABZR87_RS05465 0.46 -1.2
1,162,251 + ABZR87_RS05465 0.58 -0.8
1,162,252 - ABZR87_RS05465 0.58 -0.1
1,162,252 - ABZR87_RS05465 0.58 +1.0
1,162,427 + ABZR87_RS05465 0.85 +0.3
1,162,427 + ABZR87_RS05465 0.85 -0.7
1,162,427 + ABZR87_RS05465 0.85 +1.0
1,162,427 + ABZR87_RS05465 0.85 +0.2
1,162,427 + ABZR87_RS05465 0.85 +0.1
1,162,427 + ABZR87_RS05465 0.85 -0.8
1,162,428 - ABZR87_RS05465 0.85 -0.6
1,162,428 - ABZR87_RS05465 0.85 -0.5
1,162,428 - ABZR87_RS05465 0.85 +0.2
1,162,431 + ABZR87_RS05465 0.86 +0.7
1,162,431 + ABZR87_RS05465 0.86 +0.3
1,162,452 + ABZR87_RS05465 0.89 +1.5
1,162,452 + ABZR87_RS05465 0.89 +1.0
1,162,452 + ABZR87_RS05465 0.89 +1.3
1,162,452 + ABZR87_RS05465 0.89 -0.8
1,162,453 - ABZR87_RS05465 0.89 -0.2
1,162,483 - -0.3
1,162,483 - +0.9
1,162,483 - -4.8
1,162,483 - -1.1
1,162,483 - -0.0
1,162,509 + +0.6
1,162,509 + -0.2
1,162,509 + +0.6
1,162,510 - -1.5
1,162,510 - -0.4
1,162,535 + -0.1
1,162,535 + -1.1
1,162,546 + -0.3
1,162,546 + -0.8
1,162,547 - -0.2
1,162,547 - -0.6
1,162,907 + ABZR87_RS05470 0.54 -0.9
1,162,908 + ABZR87_RS05470 0.54 -0.2
1,162,921 + ABZR87_RS05470 0.56 -0.4
1,162,921 + ABZR87_RS05470 0.56 -0.9
1,162,922 - ABZR87_RS05470 0.56 -0.5
1,163,276 + +1.7
1,163,276 + -0.3
1,163,277 - +0.0
1,163,277 - +1.6
1,163,277 - -1.9
1,163,311 + -0.6
1,163,311 + +0.5
1,163,401 - +0.4
1,163,401 - -0.5
1,163,401 - -0.7
1,163,427 - +0.6
1,163,427 - -0.9
1,163,427 - -1.5
1,163,459 + +0.0
1,163,459 + -0.4
1,163,460 - +0.2
1,163,488 + -0.6
1,163,488 + +0.4
1,163,491 + +0.5
1,163,492 - -0.1
1,163,492 - +0.8
1,163,518 + +0.9
1,163,552 - -1.2
1,163,552 - +0.1
1,163,614 + ABZR87_RS05475 0.21 +0.9
1,163,614 + ABZR87_RS05475 0.21 -0.0
1,163,615 - ABZR87_RS05475 0.21 +0.2
1,163,615 - ABZR87_RS05475 0.21 +0.2
1,163,615 - ABZR87_RS05475 0.21 -0.5
1,163,615 - ABZR87_RS05475 0.21 +0.6
1,163,615 - ABZR87_RS05475 0.21 -0.3
1,163,615 - ABZR87_RS05475 0.21 +2.0
1,163,650 + ABZR87_RS05475 0.34 +0.2
1,163,650 + ABZR87_RS05475 0.34 -0.8
1,163,650 + ABZR87_RS05475 0.34 +2.4
1,163,650 + ABZR87_RS05475 0.34 +1.4
1,163,651 - ABZR87_RS05475 0.34 -0.5
1,163,651 - ABZR87_RS05475 0.34 -0.7
1,163,651 - ABZR87_RS05475 0.34 -0.3
1,163,651 - ABZR87_RS05475 0.34 +0.1
1,163,651 - ABZR87_RS05475 0.34 -0.0
1,163,668 + ABZR87_RS05475 0.40 -0.5
1,163,668 + ABZR87_RS05475 0.40 -1.6
1,163,668 + ABZR87_RS05475 0.40 +0.6
1,163,668 + ABZR87_RS05475 0.40 -0.2
1,163,669 - ABZR87_RS05475 0.41 +0.6
1,163,669 - ABZR87_RS05475 0.41 +0.4
1,163,669 - ABZR87_RS05475 0.41 -0.8
1,163,669 - ABZR87_RS05475 0.41 -0.4
1,163,669 - ABZR87_RS05475 0.41 +0.4
1,163,669 - ABZR87_RS05475 0.41 -1.1
1,163,669 - ABZR87_RS05475 0.41 -0.2
1,163,698 - ABZR87_RS05475 0.51 -0.4
1,163,749 + ABZR87_RS05475 0.70 -0.9
1,163,750 + ABZR87_RS05475 0.70 -1.1
1,163,750 - ABZR87_RS05475 0.70 -1.1
1,163,750 - ABZR87_RS05475 0.70 -0.8
1,163,750 - ABZR87_RS05475 0.70 -0.1
1,163,769 + ABZR87_RS05475 0.77 +0.3
1,163,770 - ABZR87_RS05475 0.77 +0.8
1,163,770 - ABZR87_RS05475 0.77 +0.7
1,163,770 - ABZR87_RS05475 0.77 -0.9
1,163,815 + +0.7
1,163,816 - +1.8
1,163,817 + -0.7
1,163,835 + -1.4
1,163,924 + +0.2
1,163,990 - -0.8
1,164,043 + -0.2
1,164,044 - +0.2
1,164,044 - -0.5
1,164,086 - +0.4

Or see this region's nucleotide sequence