Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04135 and ABZR87_RS04140 are separated by 75 nucleotides ABZR87_RS04140 and ABZR87_RS04145 are separated by 155 nucleotides ABZR87_RS04145 and ABZR87_RS04150 are separated by 107 nucleotides
ABZR87_RS04135: ABZR87_RS04135 - aldo/keto reductase, at 867,326 to 868,339
_RS04135
ABZR87_RS04140: ABZR87_RS04140 - ABC transporter substrate-binding protein, at 868,415 to 869,563
_RS04140
ABZR87_RS04145: ABZR87_RS04145 - short chain dehydrogenase, at 869,719 to 870,324
_RS04145
ABZR87_RS04150: ABZR87_RS04150 - LysR family transcriptional regulator CrgA, at 870,432 to 871,340
_RS04150
Position (kb) 868
869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.575 kb on + strand, within ABZR87_RS04135 at 867.576 kb on - strand, within ABZR87_RS04135 at 867.576 kb on - strand, within ABZR87_RS04135 at 867.576 kb on - strand, within ABZR87_RS04135 at 867.576 kb on - strand, within ABZR87_RS04135 at 867.576 kb on - strand, within ABZR87_RS04135 at 867.702 kb on + strand, within ABZR87_RS04135 at 867.702 kb on + strand, within ABZR87_RS04135 at 867.702 kb on + strand, within ABZR87_RS04135 at 867.702 kb on + strand, within ABZR87_RS04135 at 867.703 kb on - strand, within ABZR87_RS04135 at 867.703 kb on - strand, within ABZR87_RS04135 at 867.703 kb on - strand, within ABZR87_RS04135 at 867.703 kb on - strand, within ABZR87_RS04135 at 867.703 kb on - strand, within ABZR87_RS04135 at 867.703 kb on - strand, within ABZR87_RS04135 at 867.704 kb on + strand, within ABZR87_RS04135 at 867.704 kb on + strand, within ABZR87_RS04135 at 867.704 kb on + strand, within ABZR87_RS04135 at 867.704 kb on + strand, within ABZR87_RS04135 at 867.704 kb on + strand, within ABZR87_RS04135 at 867.705 kb on - strand, within ABZR87_RS04135 at 867.705 kb on - strand, within ABZR87_RS04135 at 867.808 kb on + strand, within ABZR87_RS04135 at 867.808 kb on + strand, within ABZR87_RS04135 at 867.887 kb on + strand, within ABZR87_RS04135 at 867.929 kb on + strand, within ABZR87_RS04135 at 867.929 kb on + strand, within ABZR87_RS04135 at 867.929 kb on + strand, within ABZR87_RS04135 at 867.929 kb on + strand, within ABZR87_RS04135 at 867.930 kb on - strand, within ABZR87_RS04135 at 867.962 kb on + strand, within ABZR87_RS04135 at 867.963 kb on - strand, within ABZR87_RS04135 at 867.963 kb on - strand, within ABZR87_RS04135 at 868.408 kb on + strand at 868.408 kb on + strand at 868.408 kb on + strand at 868.409 kb on - strand at 868.409 kb on - strand at 868.409 kb on - strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.501 kb on + strand at 868.502 kb on - strand at 868.502 kb on - strand at 868.502 kb on - strand at 868.502 kb on - strand at 868.502 kb on - strand at 868.677 kb on + strand, within ABZR87_RS04140 at 868.677 kb on + strand, within ABZR87_RS04140 at 868.678 kb on - strand, within ABZR87_RS04140 at 868.678 kb on - strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.689 kb on + strand, within ABZR87_RS04140 at 868.690 kb on - strand, within ABZR87_RS04140 at 868.690 kb on - strand, within ABZR87_RS04140 at 868.690 kb on - strand, within ABZR87_RS04140 at 868.690 kb on - strand, within ABZR87_RS04140 at 868.690 kb on - strand, within ABZR87_RS04140 at 868.701 kb on + strand, within ABZR87_RS04140 at 868.701 kb on + strand, within ABZR87_RS04140 at 868.701 kb on + strand, within ABZR87_RS04140 at 868.702 kb on - strand, within ABZR87_RS04140 at 868.842 kb on + strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.857 kb on + strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.900 kb on + strand, within ABZR87_RS04140 at 868.900 kb on + strand, within ABZR87_RS04140 at 868.901 kb on - strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.973 kb on - strand, within ABZR87_RS04140 at 869.061 kb on + strand, within ABZR87_RS04140 at 869.061 kb on + strand, within ABZR87_RS04140 at 869.061 kb on + strand, within ABZR87_RS04140 at 869.062 kb on - strand, within ABZR87_RS04140 at 869.062 kb on - strand, within ABZR87_RS04140 at 869.096 kb on + strand, within ABZR87_RS04140 at 869.096 kb on + strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.380 kb on - strand, within ABZR87_RS04140 at 869.555 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.648 kb on + strand at 869.648 kb on + strand at 869.648 kb on + strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.683 kb on - strand at 869.732 kb on + strand at 869.732 kb on + strand at 869.732 kb on + strand at 869.733 kb on - strand at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.252 kb on + strand, within ABZR87_RS04145 at 870.253 kb on - strand, within ABZR87_RS04145 at 870.253 kb on - strand, within ABZR87_RS04145 at 870.362 kb on - strand at 870.388 kb on - strand at 870.398 kb on + strand at 870.399 kb on - strand at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 867,575 + ABZR87_RS04135 0.25 -0.2 867,575 + ABZR87_RS04135 0.25 -0.1 867,575 + ABZR87_RS04135 0.25 +0.2 867,575 + ABZR87_RS04135 0.25 -2.9 867,575 + ABZR87_RS04135 0.25 -1.6 867,575 + ABZR87_RS04135 0.25 -0.5 867,575 + ABZR87_RS04135 0.25 +0.4 867,576 - ABZR87_RS04135 0.25 +0.8 867,576 - ABZR87_RS04135 0.25 +0.0 867,576 - ABZR87_RS04135 0.25 -0.4 867,576 - ABZR87_RS04135 0.25 -0.1 867,576 - ABZR87_RS04135 0.25 +0.8 867,702 + ABZR87_RS04135 0.37 -0.7 867,702 + ABZR87_RS04135 0.37 +0.3 867,702 + ABZR87_RS04135 0.37 -0.4 867,702 + ABZR87_RS04135 0.37 -1.0 867,703 - ABZR87_RS04135 0.37 -0.4 867,703 - ABZR87_RS04135 0.37 +0.9 867,703 - ABZR87_RS04135 0.37 +0.6 867,703 - ABZR87_RS04135 0.37 -0.4 867,703 - ABZR87_RS04135 0.37 -0.1 867,703 - ABZR87_RS04135 0.37 +0.1 867,704 + ABZR87_RS04135 0.37 -0.4 867,704 + ABZR87_RS04135 0.37 -0.9 867,704 + ABZR87_RS04135 0.37 -0.7 867,704 + ABZR87_RS04135 0.37 -0.6 867,704 + ABZR87_RS04135 0.37 +0.8 867,705 - ABZR87_RS04135 0.37 +0.0 867,705 - ABZR87_RS04135 0.37 +0.9 867,808 + ABZR87_RS04135 0.48 +0.4 867,808 + ABZR87_RS04135 0.48 +0.1 867,887 + ABZR87_RS04135 0.55 +0.7 867,929 + ABZR87_RS04135 0.59 -0.8 867,929 + ABZR87_RS04135 0.59 +1.1 867,929 + ABZR87_RS04135 0.59 -0.8 867,929 + ABZR87_RS04135 0.59 -0.6 867,930 - ABZR87_RS04135 0.60 -1.0 867,962 + ABZR87_RS04135 0.63 -1.5 867,963 - ABZR87_RS04135 0.63 +0.1 867,963 - ABZR87_RS04135 0.63 +0.4 868,408 + +0.1 868,408 + -0.7 868,408 + +1.8 868,409 - +0.7 868,409 - -0.7 868,409 - +0.0 868,501 + +1.2 868,501 + -0.6 868,501 + -2.1 868,502 - +0.2 868,502 - -0.9 868,502 - +1.4 868,502 - +2.3 868,502 - +0.1 868,677 + ABZR87_RS04140 0.23 -1.5 868,677 + ABZR87_RS04140 0.23 -0.1 868,678 - ABZR87_RS04140 0.23 +1.0 868,678 - ABZR87_RS04140 0.23 +0.5 868,689 + ABZR87_RS04140 0.24 -2.0 868,689 + ABZR87_RS04140 0.24 +0.6 868,689 + ABZR87_RS04140 0.24 +0.6 868,689 + ABZR87_RS04140 0.24 +1.3 868,689 + ABZR87_RS04140 0.24 +0.4 868,689 + ABZR87_RS04140 0.24 -0.5 868,689 + ABZR87_RS04140 0.24 +0.3 868,689 + ABZR87_RS04140 0.24 -0.5 868,689 + ABZR87_RS04140 0.24 -0.3 868,690 - ABZR87_RS04140 0.24 -0.8 868,690 - ABZR87_RS04140 0.24 +0.3 868,690 - ABZR87_RS04140 0.24 -0.6 868,690 - ABZR87_RS04140 0.24 +0.2 868,690 - ABZR87_RS04140 0.24 -2.6 868,701 + ABZR87_RS04140 0.25 -0.5 868,701 + ABZR87_RS04140 0.25 +1.0 868,701 + ABZR87_RS04140 0.25 -2.4 868,702 - ABZR87_RS04140 0.25 +0.1 868,842 + ABZR87_RS04140 0.37 -0.7 868,843 - ABZR87_RS04140 0.37 +0.1 868,843 - ABZR87_RS04140 0.37 +0.5 868,843 - ABZR87_RS04140 0.37 +0.7 868,843 - ABZR87_RS04140 0.37 -0.6 868,843 - ABZR87_RS04140 0.37 -0.1 868,857 + ABZR87_RS04140 0.38 +1.0 868,858 - ABZR87_RS04140 0.39 -1.1 868,858 - ABZR87_RS04140 0.39 +0.3 868,858 - ABZR87_RS04140 0.39 -0.0 868,858 - ABZR87_RS04140 0.39 -0.1 868,900 + ABZR87_RS04140 0.42 -0.6 868,900 + ABZR87_RS04140 0.42 +0.1 868,901 - ABZR87_RS04140 0.42 -0.4 868,972 + ABZR87_RS04140 0.48 -2.7 868,972 + ABZR87_RS04140 0.48 +0.9 868,972 + ABZR87_RS04140 0.48 +1.0 868,972 + ABZR87_RS04140 0.48 -0.0 868,973 - ABZR87_RS04140 0.49 +0.2 869,061 + ABZR87_RS04140 0.56 +0.3 869,061 + ABZR87_RS04140 0.56 -0.0 869,061 + ABZR87_RS04140 0.56 -0.2 869,062 - ABZR87_RS04140 0.56 +1.1 869,062 - ABZR87_RS04140 0.56 +0.4 869,096 + ABZR87_RS04140 0.59 +0.8 869,096 + ABZR87_RS04140 0.59 +0.8 869,097 - ABZR87_RS04140 0.59 +0.9 869,097 - ABZR87_RS04140 0.59 +0.3 869,097 - ABZR87_RS04140 0.59 -0.7 869,097 - ABZR87_RS04140 0.59 -0.6 869,097 - ABZR87_RS04140 0.59 +0.3 869,379 + ABZR87_RS04140 0.84 +0.3 869,379 + ABZR87_RS04140 0.84 -1.8 869,379 + ABZR87_RS04140 0.84 -0.1 869,379 + ABZR87_RS04140 0.84 -0.0 869,379 + ABZR87_RS04140 0.84 +1.8 869,379 + ABZR87_RS04140 0.84 -0.1 869,379 + ABZR87_RS04140 0.84 +0.8 869,380 - ABZR87_RS04140 0.84 +1.1 869,555 + +0.9 869,578 + -0.3 869,578 + -0.7 869,578 + -0.4 869,578 + +0.6 869,578 + +0.1 869,579 - +0.8 869,579 - +0.6 869,579 - -1.0 869,579 - -0.4 869,579 - -1.4 869,579 - -1.8 869,648 + +0.7 869,648 + -0.2 869,648 + +0.1 869,649 - +0.3 869,649 - +0.2 869,649 - -1.2 869,649 - -2.4 869,683 - -1.4 869,732 + +1.0 869,732 + -1.0 869,732 + -2.4 869,733 - -2.3 869,828 + ABZR87_RS04145 0.18 -0.9 869,828 + ABZR87_RS04145 0.18 +0.6 869,828 + ABZR87_RS04145 0.18 +1.1 869,828 + ABZR87_RS04145 0.18 -1.4 869,828 + ABZR87_RS04145 0.18 +0.1 869,828 + ABZR87_RS04145 0.18 +1.1 869,828 + ABZR87_RS04145 0.18 -0.8 869,829 - ABZR87_RS04145 0.18 -1.5 869,829 - ABZR87_RS04145 0.18 +0.0 869,829 - ABZR87_RS04145 0.18 -0.3 869,829 - ABZR87_RS04145 0.18 +0.5 869,829 - ABZR87_RS04145 0.18 +0.8 870,020 + ABZR87_RS04145 0.50 -0.1 870,020 + ABZR87_RS04145 0.50 -0.7 870,020 + ABZR87_RS04145 0.50 +0.9 870,020 + ABZR87_RS04145 0.50 -0.3 870,021 - ABZR87_RS04145 0.50 +0.2 870,021 - ABZR87_RS04145 0.50 +0.6 870,021 - ABZR87_RS04145 0.50 -0.2 870,021 - ABZR87_RS04145 0.50 -0.6 870,021 - ABZR87_RS04145 0.50 +0.4 870,252 + ABZR87_RS04145 0.88 -0.4 870,253 - ABZR87_RS04145 0.88 -0.1 870,253 - ABZR87_RS04145 0.88 -0.4 870,362 - -1.7 870,388 - +0.8 870,398 + +1.4 870,399 - +1.1 870,537 + ABZR87_RS04150 0.12 -0.4 870,537 + ABZR87_RS04150 0.12 -0.2 870,537 + ABZR87_RS04150 0.12 +0.6 870,537 + ABZR87_RS04150 0.12 -0.6 870,537 + ABZR87_RS04150 0.12 -0.5 870,537 + ABZR87_RS04150 0.12 -2.1 870,537 + ABZR87_RS04150 0.12 +9.5 870,537 + ABZR87_RS04150 0.12 -0.2 870,537 + ABZR87_RS04150 0.12 +0.8 870,537 + ABZR87_RS04150 0.12 -0.6 870,538 - ABZR87_RS04150 0.12 -0.1 870,538 - ABZR87_RS04150 0.12 +0.3 870,538 - ABZR87_RS04150 0.12 +2.0 870,538 - ABZR87_RS04150 0.12 +2.1 870,538 - ABZR87_RS04150 0.12 -0.3 870,538 - ABZR87_RS04150 0.12 -0.3 870,538 - ABZR87_RS04150 0.12 -0.5
Or see this region's nucleotide sequence