Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03610 and ABZR87_RS03615 are separated by 189 nucleotides ABZR87_RS03615 and ABZR87_RS03620 are separated by 33 nucleotides ABZR87_RS03620 and ABZR87_RS03625 are separated by 105 nucleotides ABZR87_RS03625 and ABZR87_RS03630 are separated by 109 nucleotides
ABZR87_RS03610: ABZR87_RS03610 - hypothetical protein, at 758,119 to 758,760
_RS03610
ABZR87_RS03615: ABZR87_RS03615 - Hsp20/alpha crystallin family protein, at 758,950 to 759,393
_RS03615
ABZR87_RS03620: ABZR87_RS03620 - Hsp20/alpha crystallin family protein, at 759,427 to 759,846
_RS03620
ABZR87_RS03625: ABZR87_RS03625 - hypothetical protein, at 759,952 to 760,197
_RS03625
ABZR87_RS03630: ABZR87_RS03630 - DUF892 family protein, at 760,307 to 760,819
_RS03630
Position (kb) 759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on - strand, within ABZR87_RS03610 at 758.671 kb on - strand, within ABZR87_RS03610 at 758.779 kb on - strand at 758.814 kb on + strand at 758.814 kb on + strand at 758.819 kb on + strand at 758.819 kb on + strand at 758.820 kb on - strand at 758.820 kb on - strand at 758.907 kb on + strand at 758.907 kb on + strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 759.232 kb on + strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.924 kb on + strand at 759.937 kb on + strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.941 kb on - strand at 759.941 kb on - strand at 759.941 kb on - strand at 759.941 kb on - strand at 760.105 kb on - strand, within ABZR87_RS03625 at 760.110 kb on + strand, within ABZR87_RS03625 at 760.195 kb on + strand at 760.292 kb on + strand at 760.292 kb on + strand at 760.292 kb on + strand at 760.292 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.415 kb on + strand, within ABZR87_RS03630 at 760.415 kb on + strand, within ABZR87_RS03630 at 760.416 kb on - strand, within ABZR87_RS03630 at 760.416 kb on - strand, within ABZR87_RS03630 at 760.416 kb on - strand, within ABZR87_RS03630 at 760.416 kb on - strand, within ABZR87_RS03630 at 760.416 kb on - strand, within ABZR87_RS03630 at 760.447 kb on + strand, within ABZR87_RS03630 at 760.448 kb on - strand, within ABZR87_RS03630 at 760.448 kb on - strand, within ABZR87_RS03630 at 760.448 kb on - strand, within ABZR87_RS03630 at 760.510 kb on + strand, within ABZR87_RS03630 at 760.510 kb on + strand, within ABZR87_RS03630 at 760.510 kb on + strand, within ABZR87_RS03630 at 760.510 kb on + strand, within ABZR87_RS03630 at 760.510 kb on + strand, within ABZR87_RS03630 at 760.511 kb on - strand, within ABZR87_RS03630 at 760.613 kb on + strand, within ABZR87_RS03630 at 760.613 kb on + strand, within ABZR87_RS03630 at 760.614 kb on - strand, within ABZR87_RS03630 at 760.643 kb on + strand, within ABZR87_RS03630 at 760.643 kb on + strand, within ABZR87_RS03630 at 760.643 kb on + strand, within ABZR87_RS03630 at 760.643 kb on + strand, within ABZR87_RS03630 at 760.644 kb on - strand, within ABZR87_RS03630 at 760.699 kb on - strand, within ABZR87_RS03630
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 758,670 + ABZR87_RS03610 0.86 -1.4 758,670 + ABZR87_RS03610 0.86 -0.6 758,670 - ABZR87_RS03610 0.86 -0.6 758,671 - ABZR87_RS03610 0.86 -0.9 758,779 - -0.3 758,814 + -0.0 758,814 + +0.1 758,819 + +0.0 758,819 + -0.4 758,820 - -0.1 758,820 - -0.5 758,907 + -0.8 758,907 + +0.2 758,908 - -0.2 758,908 - +0.1 758,908 - -3.1 758,908 - +1.3 759,232 + ABZR87_RS03615 0.64 +0.4 759,233 - ABZR87_RS03615 0.64 +0.6 759,233 - ABZR87_RS03615 0.64 -1.0 759,233 - ABZR87_RS03615 0.64 +1.9 759,316 + ABZR87_RS03615 0.82 +0.7 759,316 + ABZR87_RS03615 0.82 +1.3 759,316 + ABZR87_RS03615 0.82 -0.4 759,316 + ABZR87_RS03615 0.82 +1.0 759,316 + ABZR87_RS03615 0.82 +1.1 759,317 - ABZR87_RS03615 0.83 -1.0 759,317 - ABZR87_RS03615 0.83 +0.4 759,317 - ABZR87_RS03615 0.83 +1.0 759,317 - ABZR87_RS03615 0.83 -0.1 759,924 + -1.3 759,937 + +0.3 759,938 - -0.1 759,938 - -1.1 759,938 - +0.2 759,938 - -1.3 759,938 - -2.2 759,940 + +3.1 759,940 + +0.8 759,940 + -0.8 759,940 + -0.7 759,940 + +3.0 759,940 + -0.1 759,940 + +0.1 759,941 - +0.8 759,941 - +0.0 759,941 - +0.4 759,941 - -0.8 760,105 - ABZR87_RS03625 0.62 +0.3 760,110 + ABZR87_RS03625 0.64 +1.6 760,195 + +0.7 760,292 + -0.1 760,292 + -0.4 760,292 + -0.0 760,292 + -0.7 760,312 + -0.3 760,312 + -0.2 760,312 + -1.6 760,312 + -0.1 760,312 + -1.3 760,312 + -0.5 760,313 - -0.0 760,313 - -0.5 760,313 - +0.8 760,313 - -0.0 760,313 - -0.7 760,313 - -0.1 760,313 - -0.1 760,313 - -0.8 760,313 - +0.0 760,415 + ABZR87_RS03630 0.21 -0.3 760,415 + ABZR87_RS03630 0.21 -1.3 760,416 - ABZR87_RS03630 0.21 -1.2 760,416 - ABZR87_RS03630 0.21 +0.1 760,416 - ABZR87_RS03630 0.21 -0.8 760,416 - ABZR87_RS03630 0.21 +1.9 760,416 - ABZR87_RS03630 0.21 -1.2 760,447 + ABZR87_RS03630 0.27 +0.2 760,448 - ABZR87_RS03630 0.27 +0.6 760,448 - ABZR87_RS03630 0.27 +0.1 760,448 - ABZR87_RS03630 0.27 +0.2 760,510 + ABZR87_RS03630 0.40 +0.7 760,510 + ABZR87_RS03630 0.40 -0.6 760,510 + ABZR87_RS03630 0.40 +0.1 760,510 + ABZR87_RS03630 0.40 -0.5 760,510 + ABZR87_RS03630 0.40 +1.0 760,511 - ABZR87_RS03630 0.40 +0.3 760,613 + ABZR87_RS03630 0.60 -0.3 760,613 + ABZR87_RS03630 0.60 -1.2 760,614 - ABZR87_RS03630 0.60 +0.9 760,643 + ABZR87_RS03630 0.65 -0.2 760,643 + ABZR87_RS03630 0.65 +0.0 760,643 + ABZR87_RS03630 0.65 +0.1 760,643 + ABZR87_RS03630 0.65 -2.0 760,644 - ABZR87_RS03630 0.66 -0.5 760,699 - ABZR87_RS03630 0.76 +0.8
Or see this region's nucleotide sequence