Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01420 and ABZR87_RS01425 are separated by 152 nucleotides ABZR87_RS01425 and ABZR87_RS01430 are separated by 72 nucleotides ABZR87_RS01430 and ABZR87_RS01435 are separated by 314 nucleotides
ABZR87_RS01420: ABZR87_RS01420 - outer membrane protein assembly factor BamE, at 298,519 to 299,175
_RS01420
ABZR87_RS01425: ABZR87_RS01425 - ferric iron uptake transcriptional regulator, at 299,328 to 299,759
_RS01425
ABZR87_RS01430: ABZR87_RS01430 - LysR family transcriptional regulator, at 299,832 to 300,875
_RS01430
ABZR87_RS01435: ABZR87_RS01435 - type I glyceraldehyde-3-phosphate dehydrogenase, at 301,190 to 302,188
_RS01435
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13 at 298.878 kb on - strand, within ABZR87_RS01420 at 298.878 kb on - strand, within ABZR87_RS01420 at 299.060 kb on + strand, within ABZR87_RS01420 at 299.061 kb on - strand, within ABZR87_RS01420 at 299.061 kb on - strand, within ABZR87_RS01420 at 299.207 kb on - strand at 299.212 kb on + strand at 299.261 kb on - strand at 299.308 kb on + strand at 299.308 kb on + strand at 299.308 kb on + strand at 299.309 kb on - strand at 299.309 kb on - strand at 299.313 kb on + strand at 299.442 kb on + strand, within ABZR87_RS01425 at 299.442 kb on + strand, within ABZR87_RS01425 at 299.443 kb on - strand, within ABZR87_RS01425 at 299.490 kb on + strand, within ABZR87_RS01425 at 299.490 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.562 kb on + strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.563 kb on - strand, within ABZR87_RS01425 at 299.713 kb on - strand, within ABZR87_RS01425 at 299.953 kb on + strand, within ABZR87_RS01430 at 299.953 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.008 kb on + strand, within ABZR87_RS01430 at 300.009 kb on - strand, within ABZR87_RS01430 at 300.009 kb on - strand, within ABZR87_RS01430 at 300.009 kb on - strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.088 kb on + strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.089 kb on - strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.104 kb on + strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.105 kb on - strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.176 kb on + strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.177 kb on - strand, within ABZR87_RS01430 at 300.226 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.808 kb on + strand at 300.808 kb on + strand at 300.808 kb on + strand at 300.808 kb on + strand at 300.808 kb on + strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.972 kb on + strand at 300.972 kb on + strand at 300.975 kb on + strand at 300.976 kb on - strand at 300.976 kb on - strand at 300.989 kb on - strand at 300.989 kb on - strand at 301.045 kb on + strand at 301.110 kb on + strand at 301.111 kb on - strand at 301.112 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 298,878 - ABZR87_RS01420 0.55 +1.5 298,878 - ABZR87_RS01420 0.55 -0.1 299,060 + ABZR87_RS01420 0.82 +1.1 299,061 - ABZR87_RS01420 0.82 +1.7 299,061 - ABZR87_RS01420 0.82 +0.7 299,207 - -0.5 299,212 + +1.3 299,261 - +1.3 299,308 + -1.3 299,308 + -1.5 299,308 + -0.5 299,309 - +1.4 299,309 - -1.0 299,313 + +0.2 299,442 + ABZR87_RS01425 0.26 +0.6 299,442 + ABZR87_RS01425 0.26 +0.6 299,443 - ABZR87_RS01425 0.27 +2.1 299,490 + ABZR87_RS01425 0.38 -0.4 299,490 + ABZR87_RS01425 0.38 +0.1 299,562 + ABZR87_RS01425 0.54 -0.3 299,562 + ABZR87_RS01425 0.54 +2.3 299,562 + ABZR87_RS01425 0.54 +0.6 299,562 + ABZR87_RS01425 0.54 +0.4 299,562 + ABZR87_RS01425 0.54 +0.9 299,562 + ABZR87_RS01425 0.54 +1.3 299,562 + ABZR87_RS01425 0.54 +0.2 299,563 - ABZR87_RS01425 0.54 +1.5 299,563 - ABZR87_RS01425 0.54 +0.5 299,563 - ABZR87_RS01425 0.54 +1.5 299,563 - ABZR87_RS01425 0.54 +0.3 299,713 - ABZR87_RS01425 0.89 -0.9 299,953 + ABZR87_RS01430 0.12 -0.2 299,953 + ABZR87_RS01430 0.12 +0.1 300,008 + ABZR87_RS01430 0.17 +8.8 300,008 + ABZR87_RS01430 0.17 +8.8 300,008 + ABZR87_RS01430 0.17 +9.3 300,008 + ABZR87_RS01430 0.17 +8.7 300,008 + ABZR87_RS01430 0.17 +9.0 300,009 - ABZR87_RS01430 0.17 +9.1 300,009 - ABZR87_RS01430 0.17 +8.6 300,009 - ABZR87_RS01430 0.17 +9.1 300,088 + ABZR87_RS01430 0.25 +8.8 300,088 + ABZR87_RS01430 0.25 +9.1 300,088 + ABZR87_RS01430 0.25 +9.1 300,088 + ABZR87_RS01430 0.25 +7.8 300,088 + ABZR87_RS01430 0.25 +9.4 300,088 + ABZR87_RS01430 0.25 +8.7 300,088 + ABZR87_RS01430 0.25 +8.6 300,089 - ABZR87_RS01430 0.25 +8.6 300,089 - ABZR87_RS01430 0.25 +9.1 300,089 - ABZR87_RS01430 0.25 +9.0 300,089 - ABZR87_RS01430 0.25 +8.9 300,104 + ABZR87_RS01430 0.26 +8.8 300,104 + ABZR87_RS01430 0.26 +8.9 300,104 + ABZR87_RS01430 0.26 +9.1 300,104 + ABZR87_RS01430 0.26 +9.1 300,105 - ABZR87_RS01430 0.26 +9.2 300,105 - ABZR87_RS01430 0.26 +9.2 300,105 - ABZR87_RS01430 0.26 +8.3 300,105 - ABZR87_RS01430 0.26 +8.9 300,176 + ABZR87_RS01430 0.33 +8.8 300,176 + ABZR87_RS01430 0.33 +8.8 300,176 + ABZR87_RS01430 0.33 +8.7 300,176 + ABZR87_RS01430 0.33 +8.9 300,176 + ABZR87_RS01430 0.33 +9.0 300,176 + ABZR87_RS01430 0.33 +9.2 300,177 - ABZR87_RS01430 0.33 +9.0 300,177 - ABZR87_RS01430 0.33 +8.4 300,177 - ABZR87_RS01430 0.33 +8.8 300,177 - ABZR87_RS01430 0.33 +9.0 300,177 - ABZR87_RS01430 0.33 +9.1 300,177 - ABZR87_RS01430 0.33 +8.7 300,177 - ABZR87_RS01430 0.33 +9.2 300,226 + ABZR87_RS01430 0.38 +9.2 300,304 + ABZR87_RS01430 0.45 +8.7 300,304 + ABZR87_RS01430 0.45 +9.0 300,304 + ABZR87_RS01430 0.45 +9.3 300,304 + ABZR87_RS01430 0.45 +9.1 300,304 + ABZR87_RS01430 0.45 +8.9 300,304 + ABZR87_RS01430 0.45 +8.6 300,305 - ABZR87_RS01430 0.45 +8.9 300,305 - ABZR87_RS01430 0.45 +8.7 300,305 - ABZR87_RS01430 0.45 +9.0 300,305 - ABZR87_RS01430 0.45 +8.9 300,305 - ABZR87_RS01430 0.45 +8.5 300,305 - ABZR87_RS01430 0.45 +9.5 300,696 - ABZR87_RS01430 0.83 +9.1 300,696 - ABZR87_RS01430 0.83 +9.0 300,696 - ABZR87_RS01430 0.83 +9.2 300,808 + +9.1 300,808 + +9.1 300,808 + +9.3 300,808 + +8.8 300,808 + +10.6 300,809 - +8.9 300,809 - +9.0 300,809 - +8.8 300,809 - +8.9 300,809 - +9.0 300,972 + +8.4 300,972 + +8.2 300,975 + +13.1 300,976 - +0.3 300,976 - -1.9 300,989 - +0.0 300,989 - -2.8 301,045 + +4.5 301,110 + +5.1 301,111 - -0.3 301,112 - +0.1 301,192 - -0.1 301,192 - +0.4 301,192 - +0.6 301,192 - -0.0 301,192 - +0.6 301,192 - +0.7
Or see this region's nucleotide sequence