Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01375 and ABZR87_RS01380 are separated by 82 nucleotides ABZR87_RS01380 and ABZR87_RS01385 are separated by 33 nucleotides
ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725
_RS01375
ABZR87_RS01380: ABZR87_RS01380 - response regulator, at 288,808 to 289,815
_RS01380
ABZR87_RS01385: ABZR87_RS01385 - class I SAM-dependent RNA methyltransferase, at 289,849 to 291,258
_RS01385
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 287.883 kb on + strand, within ABZR87_RS01375 at 287.883 kb on + strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.884 kb on - strand, within ABZR87_RS01375 at 287.952 kb on + strand, within ABZR87_RS01375 at 287.953 kb on - strand, within ABZR87_RS01375 at 288.205 kb on - strand, within ABZR87_RS01375 at 288.205 kb on - strand, within ABZR87_RS01375 at 288.253 kb on - strand, within ABZR87_RS01375 at 288.253 kb on - strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.321 kb on + strand, within ABZR87_RS01375 at 288.322 kb on - strand, within ABZR87_RS01375 at 288.322 kb on - strand, within ABZR87_RS01375 at 288.357 kb on + strand, within ABZR87_RS01375 at 288.741 kb on + strand at 288.741 kb on + strand at 288.742 kb on - strand at 288.742 kb on - strand at 288.742 kb on - strand at 288.793 kb on + strand at 288.793 kb on + strand at 288.794 kb on - strand at 288.844 kb on + strand at 288.844 kb on + strand at 288.844 kb on + strand at 288.845 kb on - strand at 288.874 kb on + strand at 288.874 kb on + strand at 288.874 kb on + strand at 288.874 kb on + strand at 288.875 kb on - strand at 289.028 kb on - strand, within ABZR87_RS01380 at 289.076 kb on - strand, within ABZR87_RS01380 at 289.076 kb on - strand, within ABZR87_RS01380 at 289.129 kb on + strand, within ABZR87_RS01380 at 289.129 kb on + strand, within ABZR87_RS01380 at 289.129 kb on + strand, within ABZR87_RS01380 at 289.130 kb on - strand, within ABZR87_RS01380 at 289.130 kb on - strand, within ABZR87_RS01380 at 289.130 kb on - strand, within ABZR87_RS01380 at 289.131 kb on + strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.132 kb on - strand, within ABZR87_RS01380 at 289.292 kb on - strand, within ABZR87_RS01380 at 289.292 kb on - strand, within ABZR87_RS01380 at 289.337 kb on - strand, within ABZR87_RS01380 at 289.337 kb on - strand, within ABZR87_RS01380 at 289.337 kb on - strand, within ABZR87_RS01380 at 289.403 kb on - strand, within ABZR87_RS01380 at 289.403 kb on - strand, within ABZR87_RS01380 at 289.468 kb on + strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.469 kb on - strand, within ABZR87_RS01380 at 289.850 kb on + strand at 289.850 kb on + strand at 289.850 kb on + strand at 289.851 kb on - strand at 289.851 kb on - strand at 289.851 kb on - strand at 289.851 kb on - strand at 289.851 kb on - strand at 289.885 kb on + strand at 289.964 kb on + strand at 289.965 kb on - strand at 289.975 kb on - strand at 290.284 kb on - strand, within ABZR87_RS01385 at 290.340 kb on + strand, within ABZR87_RS01385 at 290.414 kb on + strand, within ABZR87_RS01385 at 290.414 kb on + strand, within ABZR87_RS01385 at 290.415 kb on - strand, within ABZR87_RS01385 at 290.580 kb on + strand, within ABZR87_RS01385 at 290.639 kb on + strand, within ABZR87_RS01385 at 290.639 kb on + strand, within ABZR87_RS01385 at 290.640 kb on - strand, within ABZR87_RS01385 at 290.774 kb on + strand, within ABZR87_RS01385 at 290.775 kb on - strand, within ABZR87_RS01385 at 290.775 kb on - strand, within ABZR87_RS01385 at 290.775 kb on - strand, within ABZR87_RS01385 at 290.801 kb on + strand, within ABZR87_RS01385 at 290.801 kb on + strand, within ABZR87_RS01385 at 290.801 kb on + strand, within ABZR87_RS01385 at 290.801 kb on + strand, within ABZR87_RS01385 at 290.802 kb on - strand, within ABZR87_RS01385 at 290.802 kb on - strand, within ABZR87_RS01385 at 290.802 kb on - strand, within ABZR87_RS01385 at 290.802 kb on - strand, within ABZR87_RS01385 at 290.802 kb on - strand, within ABZR87_RS01385 at 290.807 kb on + strand, within ABZR87_RS01385 at 290.807 kb on + strand, within ABZR87_RS01385 at 290.807 kb on + strand, within ABZR87_RS01385 at 290.807 kb on + strand, within ABZR87_RS01385 at 290.807 kb on + strand, within ABZR87_RS01385 at 290.807 kb on + strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385 at 290.808 kb on - strand, within ABZR87_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 287,883 + ABZR87_RS01375 0.24 +10.2 287,883 + ABZR87_RS01375 0.24 +10.9 287,884 - ABZR87_RS01375 0.24 +11.4 287,884 - ABZR87_RS01375 0.24 +11.9 287,884 - ABZR87_RS01375 0.24 +11.3 287,884 - ABZR87_RS01375 0.24 +11.0 287,952 + ABZR87_RS01375 0.30 +11.2 287,953 - ABZR87_RS01375 0.30 +11.0 288,205 - ABZR87_RS01375 0.53 +11.2 288,205 - ABZR87_RS01375 0.53 +11.1 288,253 - ABZR87_RS01375 0.57 +11.2 288,253 - ABZR87_RS01375 0.57 +11.5 288,321 + ABZR87_RS01375 0.63 +10.6 288,321 + ABZR87_RS01375 0.63 +11.2 288,321 + ABZR87_RS01375 0.63 +10.7 288,321 + ABZR87_RS01375 0.63 +11.6 288,322 - ABZR87_RS01375 0.64 +10.8 288,322 - ABZR87_RS01375 0.64 +10.9 288,357 + ABZR87_RS01375 0.67 +10.8 288,741 + +0.3 288,741 + +0.7 288,742 - +0.9 288,742 - +1.0 288,742 - -0.4 288,793 + +0.2 288,793 + -1.2 288,794 - +0.7 288,844 + +0.6 288,844 + +1.0 288,844 + +1.7 288,845 - +0.9 288,874 + +1.1 288,874 + -1.1 288,874 + +0.6 288,874 + +0.8 288,875 - +0.6 289,028 - ABZR87_RS01380 0.22 +0.1 289,076 - ABZR87_RS01380 0.27 -0.5 289,076 - ABZR87_RS01380 0.27 +0.9 289,129 + ABZR87_RS01380 0.32 +1.6 289,129 + ABZR87_RS01380 0.32 +1.3 289,129 + ABZR87_RS01380 0.32 +2.5 289,130 - ABZR87_RS01380 0.32 +0.7 289,130 - ABZR87_RS01380 0.32 +1.7 289,130 - ABZR87_RS01380 0.32 +0.8 289,131 + ABZR87_RS01380 0.32 +0.2 289,132 - ABZR87_RS01380 0.32 +0.6 289,132 - ABZR87_RS01380 0.32 -1.7 289,132 - ABZR87_RS01380 0.32 -0.5 289,132 - ABZR87_RS01380 0.32 +0.4 289,132 - ABZR87_RS01380 0.32 +0.5 289,132 - ABZR87_RS01380 0.32 +0.8 289,132 - ABZR87_RS01380 0.32 +0.5 289,292 - ABZR87_RS01380 0.48 -0.1 289,292 - ABZR87_RS01380 0.48 +1.2 289,337 - ABZR87_RS01380 0.52 +0.6 289,337 - ABZR87_RS01380 0.52 +0.2 289,337 - ABZR87_RS01380 0.52 +0.5 289,403 - ABZR87_RS01380 0.59 +2.0 289,403 - ABZR87_RS01380 0.59 +1.1 289,468 + ABZR87_RS01380 0.65 +0.3 289,469 - ABZR87_RS01380 0.66 +0.3 289,469 - ABZR87_RS01380 0.66 +0.8 289,469 - ABZR87_RS01380 0.66 +0.0 289,469 - ABZR87_RS01380 0.66 +0.1 289,850 + -1.1 289,850 + +2.1 289,850 + -0.7 289,851 - -1.6 289,851 - -0.7 289,851 - +1.0 289,851 - +2.5 289,851 - +0.6 289,885 + -0.4 289,964 + +0.5 289,965 - +0.5 289,975 - +0.9 290,284 - ABZR87_RS01385 0.31 +0.1 290,340 + ABZR87_RS01385 0.35 -0.2 290,414 + ABZR87_RS01385 0.40 +0.7 290,414 + ABZR87_RS01385 0.40 +0.9 290,415 - ABZR87_RS01385 0.40 +0.5 290,580 + ABZR87_RS01385 0.52 +0.2 290,639 + ABZR87_RS01385 0.56 -1.2 290,639 + ABZR87_RS01385 0.56 +0.9 290,640 - ABZR87_RS01385 0.56 -0.5 290,774 + ABZR87_RS01385 0.66 +0.1 290,775 - ABZR87_RS01385 0.66 +0.3 290,775 - ABZR87_RS01385 0.66 +0.4 290,775 - ABZR87_RS01385 0.66 -0.7 290,801 + ABZR87_RS01385 0.68 +0.5 290,801 + ABZR87_RS01385 0.68 -0.8 290,801 + ABZR87_RS01385 0.68 +0.9 290,801 + ABZR87_RS01385 0.68 +0.4 290,802 - ABZR87_RS01385 0.68 +0.6 290,802 - ABZR87_RS01385 0.68 +0.4 290,802 - ABZR87_RS01385 0.68 -1.8 290,802 - ABZR87_RS01385 0.68 -0.3 290,802 - ABZR87_RS01385 0.68 +0.7 290,807 + ABZR87_RS01385 0.68 +0.5 290,807 + ABZR87_RS01385 0.68 +0.6 290,807 + ABZR87_RS01385 0.68 +1.5 290,807 + ABZR87_RS01385 0.68 -0.3 290,807 + ABZR87_RS01385 0.68 +0.7 290,807 + ABZR87_RS01385 0.68 +0.8 290,808 - ABZR87_RS01385 0.68 -1.1 290,808 - ABZR87_RS01385 0.68 -0.9 290,808 - ABZR87_RS01385 0.68 +0.3 290,808 - ABZR87_RS01385 0.68 +0.0 290,808 - ABZR87_RS01385 0.68 +0.3 290,808 - ABZR87_RS01385 0.68 -0.4 290,808 - ABZR87_RS01385 0.68 -1.1 290,808 - ABZR87_RS01385 0.68 -1.6 290,808 - ABZR87_RS01385 0.68 +1.4
Or see this region's nucleotide sequence