Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01315 and ABZR87_RS01320 are separated by 239 nucleotides ABZR87_RS01320 and ABZR87_RS01325 are separated by 20 nucleotides
ABZR87_RS01315: ABZR87_RS01315 - adenylosuccinate lyase, at 273,733 to 275,106
_RS01315
ABZR87_RS01320: ABZR87_RS01320 - glutathione S-transferase, at 275,346 to 275,954
_RS01320
ABZR87_RS01325: ABZR87_RS01325 - FMN-binding glutamate synthase family protein, at 275,975 to 277,573
_RS01325
Position (kb) 275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 275.185 kb on - strand at 275.249 kb on + strand at 275.318 kb on - strand at 275.319 kb on + strand at 275.319 kb on + strand at 275.319 kb on + strand at 275.320 kb on - strand at 275.320 kb on - strand at 275.320 kb on - strand at 275.320 kb on - strand at 275.320 kb on - strand at 275.345 kb on + strand at 275.345 kb on + strand at 275.345 kb on + strand at 275.345 kb on + strand at 275.346 kb on - strand at 275.377 kb on - strand at 275.377 kb on - strand at 275.421 kb on + strand, within ABZR87_RS01320 at 275.422 kb on - strand, within ABZR87_RS01320 at 275.456 kb on + strand, within ABZR87_RS01320 at 275.456 kb on + strand, within ABZR87_RS01320 at 275.457 kb on - strand, within ABZR87_RS01320 at 275.457 kb on - strand, within ABZR87_RS01320 at 275.457 kb on - strand, within ABZR87_RS01320 at 275.457 kb on - strand, within ABZR87_RS01320 at 275.457 kb on - strand, within ABZR87_RS01320 at 275.678 kb on + strand, within ABZR87_RS01320 at 275.678 kb on + strand, within ABZR87_RS01320 at 275.678 kb on + strand, within ABZR87_RS01320 at 275.678 kb on + strand, within ABZR87_RS01320 at 275.679 kb on - strand, within ABZR87_RS01320 at 275.679 kb on - strand, within ABZR87_RS01320 at 275.679 kb on - strand, within ABZR87_RS01320 at 275.679 kb on - strand, within ABZR87_RS01320 at 275.841 kb on + strand, within ABZR87_RS01320 at 275.904 kb on + strand at 275.904 kb on + strand at 275.904 kb on + strand at 275.904 kb on + strand at 275.976 kb on + strand at 275.977 kb on - strand at 276.022 kb on - strand at 276.030 kb on + strand at 276.030 kb on + strand at 276.030 kb on + strand at 276.030 kb on + strand at 276.030 kb on + strand at 276.031 kb on - strand at 276.031 kb on - strand at 276.078 kb on + strand at 276.079 kb on - strand at 276.079 kb on - strand at 276.216 kb on + strand, within ABZR87_RS01325 at 276.217 kb on - strand, within ABZR87_RS01325 at 276.682 kb on + strand, within ABZR87_RS01325 at 276.682 kb on + strand, within ABZR87_RS01325
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 275,185 - -0.4 275,249 + -0.8 275,318 - -1.0 275,319 + +0.4 275,319 + -0.4 275,319 + +0.3 275,320 - +1.5 275,320 - +1.8 275,320 - -0.2 275,320 - -0.1 275,320 - -1.3 275,345 + +1.2 275,345 + -0.0 275,345 + +0.6 275,345 + +0.4 275,346 - +0.5 275,377 - +0.9 275,377 - +1.5 275,421 + ABZR87_RS01320 0.12 +0.3 275,422 - ABZR87_RS01320 0.12 -2.1 275,456 + ABZR87_RS01320 0.18 -0.2 275,456 + ABZR87_RS01320 0.18 +0.4 275,457 - ABZR87_RS01320 0.18 -0.5 275,457 - ABZR87_RS01320 0.18 +0.1 275,457 - ABZR87_RS01320 0.18 +1.4 275,457 - ABZR87_RS01320 0.18 +1.0 275,457 - ABZR87_RS01320 0.18 -1.4 275,678 + ABZR87_RS01320 0.55 +0.1 275,678 + ABZR87_RS01320 0.55 +0.7 275,678 + ABZR87_RS01320 0.55 +0.8 275,678 + ABZR87_RS01320 0.55 +0.4 275,679 - ABZR87_RS01320 0.55 +0.6 275,679 - ABZR87_RS01320 0.55 -0.4 275,679 - ABZR87_RS01320 0.55 +0.5 275,679 - ABZR87_RS01320 0.55 -0.9 275,841 + ABZR87_RS01320 0.81 -1.1 275,904 + -0.1 275,904 + +1.9 275,904 + -1.7 275,904 + +0.6 275,976 + -0.6 275,977 - -0.1 276,022 - +0.3 276,030 + -2.4 276,030 + +0.0 276,030 + -0.0 276,030 + -0.5 276,030 + -0.2 276,031 - -0.9 276,031 - -0.4 276,078 + -0.2 276,079 - +0.3 276,079 - -0.6 276,216 + ABZR87_RS01325 0.15 +0.2 276,217 - ABZR87_RS01325 0.15 +1.5 276,682 + ABZR87_RS01325 0.44 +0.0 276,682 + ABZR87_RS01325 0.44 -1.3
Or see this region's nucleotide sequence