Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3603 and Rru_A3604 are separated by 106 nucleotides Rru_A3604 and Rru_A3605 overlap by 4 nucleotides Rru_A3605 and Rru_A3606 are separated by 12 nucleotides
Rru_A3603: Rru_A3603 - Protein of unknown function DUF162 (NCBI), at 4,143,313 to 4,143,987
_A3603
Rru_A3604: Rru_A3604 - hypothetical protein (NCBI), at 4,144,094 to 4,144,705
_A3604
Rru_A3605: Rru_A3605 - Iron-sulfur cluster binding protein (NCBI), at 4,144,702 to 4,146,120
_A3605
Rru_A3606: Rru_A3606 - Protein of unknown function DUF224, cysteine-rich region (NCBI), at 4,146,133 to 4,146,945
_A3606
Position (kb)
4144
4145
4146
4147 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4143.726 kb on + strand, within Rru_A3603 at 4143.727 kb on - strand, within Rru_A3603 at 4143.727 kb on - strand, within Rru_A3603 at 4143.740 kb on + strand, within Rru_A3603 at 4143.969 kb on + strand at 4143.988 kb on - strand at 4143.988 kb on - strand at 4144.018 kb on + strand at 4144.279 kb on + strand, within Rru_A3604 at 4144.356 kb on + strand, within Rru_A3604 at 4144.356 kb on + strand, within Rru_A3604 at 4144.356 kb on + strand, within Rru_A3604 at 4144.356 kb on + strand, within Rru_A3604 at 4144.356 kb on + strand, within Rru_A3604 at 4144.357 kb on - strand, within Rru_A3604 at 4144.357 kb on - strand, within Rru_A3604 at 4144.357 kb on - strand, within Rru_A3604 at 4144.453 kb on + strand, within Rru_A3604 at 4144.453 kb on + strand, within Rru_A3604 at 4144.453 kb on + strand, within Rru_A3604 at 4144.453 kb on + strand, within Rru_A3604 at 4144.453 kb on + strand, within Rru_A3604 at 4144.454 kb on - strand, within Rru_A3604 at 4144.454 kb on - strand, within Rru_A3604 at 4144.456 kb on + strand, within Rru_A3604 at 4144.493 kb on - strand, within Rru_A3604 at 4144.541 kb on + strand, within Rru_A3604 at 4144.541 kb on + strand, within Rru_A3604 at 4144.541 kb on + strand, within Rru_A3604 at 4145.117 kb on + strand, within Rru_A3605 at 4145.117 kb on + strand, within Rru_A3605 at 4145.118 kb on - strand, within Rru_A3605 at 4145.141 kb on + strand, within Rru_A3605 at 4145.304 kb on + strand, within Rru_A3605 at 4145.304 kb on + strand, within Rru_A3605 at 4145.305 kb on - strand, within Rru_A3605 at 4145.305 kb on - strand, within Rru_A3605 at 4145.305 kb on - strand, within Rru_A3605 at 4145.305 kb on - strand, within Rru_A3605 at 4145.305 kb on - strand, within Rru_A3605 at 4145.305 kb on - strand, within Rru_A3605 at 4145.307 kb on - strand, within Rru_A3605 at 4145.493 kb on + strand, within Rru_A3605 at 4145.493 kb on + strand, within Rru_A3605 at 4145.493 kb on + strand, within Rru_A3605 at 4145.493 kb on + strand, within Rru_A3605 at 4145.493 kb on + strand, within Rru_A3605 at 4145.493 kb on + strand, within Rru_A3605 at 4145.705 kb on + strand, within Rru_A3605 at 4145.705 kb on + strand, within Rru_A3605 at 4145.705 kb on + strand, within Rru_A3605 at 4145.705 kb on + strand, within Rru_A3605 at 4145.705 kb on + strand, within Rru_A3605 at 4145.706 kb on - strand, within Rru_A3605 at 4145.706 kb on - strand, within Rru_A3605 at 4145.706 kb on - strand, within Rru_A3605 at 4145.753 kb on + strand, within Rru_A3605 at 4145.754 kb on - strand, within Rru_A3605 at 4146.374 kb on + strand, within Rru_A3606 at 4146.375 kb on - strand, within Rru_A3606 at 4146.375 kb on - strand, within Rru_A3606 at 4146.480 kb on + strand, within Rru_A3606 at 4146.481 kb on - strand, within Rru_A3606 at 4146.518 kb on + strand, within Rru_A3606 at 4146.518 kb on + strand, within Rru_A3606 at 4146.519 kb on - strand, within Rru_A3606 at 4146.549 kb on + strand, within Rru_A3606 at 4146.549 kb on + strand, within Rru_A3606 at 4146.707 kb on + strand, within Rru_A3606 at 4146.708 kb on - strand, within Rru_A3606 at 4147.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 4,143,726 + Rru_A3603 0.61 -1.1 4,143,727 - Rru_A3603 0.61 -0.5 4,143,727 - Rru_A3603 0.61 -0.5 4,143,740 + Rru_A3603 0.63 -4.3 4,143,969 + -0.7 4,143,988 - +0.2 4,143,988 - +0.8 4,144,018 + -0.4 4,144,279 + Rru_A3604 0.30 -0.9 4,144,356 + Rru_A3604 0.43 -0.3 4,144,356 + Rru_A3604 0.43 -0.6 4,144,356 + Rru_A3604 0.43 +1.1 4,144,356 + Rru_A3604 0.43 -1.6 4,144,356 + Rru_A3604 0.43 -1.0 4,144,357 - Rru_A3604 0.43 +0.4 4,144,357 - Rru_A3604 0.43 +0.9 4,144,357 - Rru_A3604 0.43 +1.0 4,144,453 + Rru_A3604 0.59 +0.2 4,144,453 + Rru_A3604 0.59 +0.3 4,144,453 + Rru_A3604 0.59 -0.3 4,144,453 + Rru_A3604 0.59 -0.3 4,144,453 + Rru_A3604 0.59 -2.5 4,144,454 - Rru_A3604 0.59 +0.5 4,144,454 - Rru_A3604 0.59 -1.1 4,144,456 + Rru_A3604 0.59 -0.1 4,144,493 - Rru_A3604 0.65 -0.7 4,144,541 + Rru_A3604 0.73 -0.2 4,144,541 + Rru_A3604 0.73 -1.1 4,144,541 + Rru_A3604 0.73 -2.1 4,145,117 + Rru_A3605 0.29 -0.7 4,145,117 + Rru_A3605 0.29 -0.4 4,145,118 - Rru_A3605 0.29 -1.8 4,145,141 + Rru_A3605 0.31 +0.5 4,145,304 + Rru_A3605 0.42 +0.4 4,145,304 + Rru_A3605 0.42 +1.4 4,145,305 - Rru_A3605 0.42 -0.7 4,145,305 - Rru_A3605 0.42 -1.4 4,145,305 - Rru_A3605 0.42 -0.4 4,145,305 - Rru_A3605 0.42 +0.7 4,145,305 - Rru_A3605 0.42 -0.0 4,145,305 - Rru_A3605 0.42 -0.3 4,145,307 - Rru_A3605 0.43 -1.8 4,145,493 + Rru_A3605 0.56 -2.5 4,145,493 + Rru_A3605 0.56 +0.0 4,145,493 + Rru_A3605 0.56 +0.3 4,145,493 + Rru_A3605 0.56 +0.7 4,145,493 + Rru_A3605 0.56 -0.4 4,145,493 + Rru_A3605 0.56 -2.7 4,145,705 + Rru_A3605 0.71 -1.9 4,145,705 + Rru_A3605 0.71 -0.8 4,145,705 + Rru_A3605 0.71 -1.0 4,145,705 + Rru_A3605 0.71 -1.4 4,145,705 + Rru_A3605 0.71 -0.0 4,145,706 - Rru_A3605 0.71 -0.5 4,145,706 - Rru_A3605 0.71 -0.9 4,145,706 - Rru_A3605 0.71 -1.1 4,145,753 + Rru_A3605 0.74 +1.0 4,145,754 - Rru_A3605 0.74 -0.5 4,146,374 + Rru_A3606 0.30 +0.2 4,146,375 - Rru_A3606 0.30 -0.5 4,146,375 - Rru_A3606 0.30 -0.5 4,146,480 + Rru_A3606 0.43 -0.1 4,146,481 - Rru_A3606 0.43 +0.2 4,146,518 + Rru_A3606 0.47 -0.2 4,146,518 + Rru_A3606 0.47 -0.6 4,146,519 - Rru_A3606 0.47 -0.5 4,146,549 + Rru_A3606 0.51 -0.6 4,146,549 + Rru_A3606 0.51 +0.4 4,146,707 + Rru_A3606 0.71 -0.4 4,146,708 - Rru_A3606 0.71 -1.6 4,147,007 + +0.6
Or see this region's nucleotide sequence