Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3435

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3434 and Rru_A3435 overlap by 4 nucleotidesRru_A3435 and Rru_A3436 are separated by 64 nucleotidesRru_A3436 and Rru_A3437 are separated by 38 nucleotides Rru_A3434: Rru_A3434 - UvrD/REP helicase (NCBI), at 3,952,272 to 3,955,835 _A3434 Rru_A3435: Rru_A3435 - hypothetical protein (NCBI), at 3,955,832 to 3,958,888 _A3435 Rru_A3436: Rru_A3436 - Nucleotidyl transferase (NCBI), at 3,958,953 to 3,959,714 _A3436 Rru_A3437: Rru_A3437 - Aminoglycoside phosphotransferase (NCBI), at 3,959,753 to 3,960,835 _A3437 Position (kb) 3955 3956 3957 3958 3959Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3958.954 kb on + strandat 3958.954 kb on + strandat 3958.955 kb on - strandat 3958.955 kb on - strandat 3958.955 kb on - strandat 3958.955 kb on - strandat 3959.371 kb on + strand, within Rru_A3436at 3959.371 kb on + strand, within Rru_A3436at 3959.372 kb on - strand, within Rru_A3436at 3959.722 kb on + strandat 3959.723 kb on - strandat 3959.736 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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3,958,954 + +0.0
3,958,954 + +1.8
3,958,955 - -0.8
3,958,955 - +0.3
3,958,955 - +2.6
3,958,955 - +0.6
3,959,371 + Rru_A3436 0.55 -0.6
3,959,371 + Rru_A3436 0.55 -2.2
3,959,372 - Rru_A3436 0.55 -0.3
3,959,722 + -3.6
3,959,723 - +1.9
3,959,736 + -0.1

Or see this region's nucleotide sequence