Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1338

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1337 and Rru_A1338 overlap by 4 nucleotidesRru_A1338 and Rru_A1339 are separated by 17 nucleotides Rru_A1337: Rru_A1337 - ABC transporter component (NCBI), at 1,573,646 to 1,575,229 _A1337 Rru_A1338: Rru_A1338 - inner-membrane translocator (NCBI), at 1,575,226 to 1,576,257 _A1338 Rru_A1339: Rru_A1339 - Transcriptional Regulator, DeoR family (NCBI), at 1,576,275 to 1,577,366 _A1339 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1at 1574.317 kb on + strand, within Rru_A1337at 1574.318 kb on - strand, within Rru_A1337at 1574.318 kb on - strand, within Rru_A1337at 1574.318 kb on - strand, within Rru_A1337at 1574.714 kb on + strand, within Rru_A1337at 1575.185 kb on + strandat 1575.185 kb on + strandat 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.511 kb on + strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.512 kb on - strand, within Rru_A1338at 1575.670 kb on + strand, within Rru_A1338at 1575.670 kb on + strand, within Rru_A1338at 1575.670 kb on + strand, within Rru_A1338at 1575.671 kb on - strand, within Rru_A1338at 1575.754 kb on + strand, within Rru_A1338at 1575.754 kb on + strand, within Rru_A1338at 1575.754 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.808 kb on + strand, within Rru_A1338at 1575.809 kb on - strand, within Rru_A1338at 1575.809 kb on - strand, within Rru_A1338at 1575.809 kb on - strand, within Rru_A1338at 1575.809 kb on - strand, within Rru_A1338at 1575.809 kb on - strand, within Rru_A1338at 1575.883 kb on + strand, within Rru_A1338at 1575.883 kb on + strand, within Rru_A1338at 1575.883 kb on + strand, within Rru_A1338at 1575.884 kb on - strand, within Rru_A1338at 1575.925 kb on + strand, within Rru_A1338at 1575.926 kb on - strand, within Rru_A1338at 1575.961 kb on + strand, within Rru_A1338at 1575.961 kb on + strand, within Rru_A1338at 1575.962 kb on - strand, within Rru_A1338at 1576.276 kb on + strandat 1576.276 kb on + strandat 1576.332 kb on - strandat 1576.514 kb on + strand, within Rru_A1339at 1576.528 kb on + strand, within Rru_A1339at 1576.528 kb on + strand, within Rru_A1339at 1576.688 kb on + strand, within Rru_A1339at 1576.688 kb on + strand, within Rru_A1339at 1576.689 kb on - strand, within Rru_A1339at 1576.689 kb on - strand, within Rru_A1339at 1576.689 kb on - strand, within Rru_A1339at 1576.689 kb on - strand, within Rru_A1339at 1576.744 kb on + strand, within Rru_A1339at 1576.745 kb on - strand, within Rru_A1339at 1576.745 kb on - strand, within Rru_A1339at 1576.745 kb on - strand, within Rru_A1339at 1576.808 kb on + strand, within Rru_A1339at 1576.808 kb on + strand, within Rru_A1339at 1576.808 kb on + strand, within Rru_A1339at 1576.808 kb on + strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.809 kb on - strand, within Rru_A1339at 1576.810 kb on + strand, within Rru_A1339at 1576.811 kb on - strand, within Rru_A1339at 1576.957 kb on + strand, within Rru_A1339at 1576.958 kb on - strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339at 1577.209 kb on + strand, within Rru_A1339

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
1,574,317 + Rru_A1337 0.42 -0.9
1,574,318 - Rru_A1337 0.42 -0.2
1,574,318 - Rru_A1337 0.42 +0.9
1,574,318 - Rru_A1337 0.42 +0.1
1,574,714 + Rru_A1337 0.67 -0.3
1,575,185 + -0.1
1,575,185 + -1.0
1,575,511 + Rru_A1338 0.28 -0.0
1,575,511 + Rru_A1338 0.28 +0.1
1,575,511 + Rru_A1338 0.28 -0.5
1,575,511 + Rru_A1338 0.28 -0.1
1,575,511 + Rru_A1338 0.28 +0.5
1,575,511 + Rru_A1338 0.28 +1.3
1,575,511 + Rru_A1338 0.28 +0.4
1,575,511 + Rru_A1338 0.28 -2.7
1,575,511 + Rru_A1338 0.28 -0.7
1,575,512 - Rru_A1338 0.28 +0.2
1,575,512 - Rru_A1338 0.28 +0.7
1,575,512 - Rru_A1338 0.28 +0.6
1,575,512 - Rru_A1338 0.28 +0.3
1,575,512 - Rru_A1338 0.28 -1.6
1,575,512 - Rru_A1338 0.28 -0.6
1,575,512 - Rru_A1338 0.28 -0.6
1,575,512 - Rru_A1338 0.28 -0.6
1,575,512 - Rru_A1338 0.28 -0.2
1,575,512 - Rru_A1338 0.28 -0.4
1,575,670 + Rru_A1338 0.43 +1.6
1,575,670 + Rru_A1338 0.43 +0.9
1,575,670 + Rru_A1338 0.43 +0.9
1,575,671 - Rru_A1338 0.43 +0.1
1,575,754 + Rru_A1338 0.51 +0.4
1,575,754 + Rru_A1338 0.51 +0.0
1,575,754 + Rru_A1338 0.51 +0.3
1,575,808 + Rru_A1338 0.56 -0.6
1,575,808 + Rru_A1338 0.56 -0.4
1,575,808 + Rru_A1338 0.56 -1.0
1,575,808 + Rru_A1338 0.56 +0.4
1,575,808 + Rru_A1338 0.56 -0.5
1,575,808 + Rru_A1338 0.56 -0.7
1,575,808 + Rru_A1338 0.56 -0.5
1,575,809 - Rru_A1338 0.56 -1.3
1,575,809 - Rru_A1338 0.56 -2.9
1,575,809 - Rru_A1338 0.56 +0.4
1,575,809 - Rru_A1338 0.56 +0.3
1,575,809 - Rru_A1338 0.56 +0.7
1,575,883 + Rru_A1338 0.64 +0.0
1,575,883 + Rru_A1338 0.64 -0.1
1,575,883 + Rru_A1338 0.64 -1.1
1,575,884 - Rru_A1338 0.64 -0.8
1,575,925 + Rru_A1338 0.68 +0.2
1,575,926 - Rru_A1338 0.68 -0.2
1,575,961 + Rru_A1338 0.71 -0.0
1,575,961 + Rru_A1338 0.71 -0.5
1,575,962 - Rru_A1338 0.71 +0.2
1,576,276 + +0.5
1,576,276 + +0.3
1,576,332 - -1.3
1,576,514 + Rru_A1339 0.22 -0.7
1,576,528 + Rru_A1339 0.23 -0.1
1,576,528 + Rru_A1339 0.23 +0.6
1,576,688 + Rru_A1339 0.38 -1.6
1,576,688 + Rru_A1339 0.38 +0.0
1,576,689 - Rru_A1339 0.38 +0.2
1,576,689 - Rru_A1339 0.38 +1.5
1,576,689 - Rru_A1339 0.38 -0.7
1,576,689 - Rru_A1339 0.38 +1.0
1,576,744 + Rru_A1339 0.43 -0.0
1,576,745 - Rru_A1339 0.43 -0.6
1,576,745 - Rru_A1339 0.43 -0.1
1,576,745 - Rru_A1339 0.43 +0.9
1,576,808 + Rru_A1339 0.49 -2.1
1,576,808 + Rru_A1339 0.49 -1.0
1,576,808 + Rru_A1339 0.49 +0.2
1,576,808 + Rru_A1339 0.49 -0.4
1,576,809 - Rru_A1339 0.49 +0.5
1,576,809 - Rru_A1339 0.49 +0.2
1,576,809 - Rru_A1339 0.49 +0.4
1,576,809 - Rru_A1339 0.49 -0.2
1,576,809 - Rru_A1339 0.49 -1.3
1,576,809 - Rru_A1339 0.49 -0.2
1,576,809 - Rru_A1339 0.49 +0.3
1,576,809 - Rru_A1339 0.49 +0.6
1,576,809 - Rru_A1339 0.49 -2.8
1,576,810 + Rru_A1339 0.49 +0.7
1,576,811 - Rru_A1339 0.49 +0.8
1,576,957 + Rru_A1339 0.62 -0.6
1,576,958 - Rru_A1339 0.63 -0.3
1,577,209 + Rru_A1339 0.86 -0.4
1,577,209 + Rru_A1339 0.86 -1.0
1,577,209 + Rru_A1339 0.86 -1.1
1,577,209 + Rru_A1339 0.86 +0.3
1,577,209 + Rru_A1339 0.86 -0.5

Or see this region's nucleotide sequence