Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0970

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0969 and Rru_A0970 are separated by 44 nucleotidesRru_A0970 and Rru_A0971 overlap by 4 nucleotides Rru_A0969: Rru_A0969 - VWA containing CoxE-like (NCBI), at 1,153,951 to 1,155,216 _A0969 Rru_A0970: Rru_A0970 - hypothetical protein (NCBI), at 1,155,261 to 1,155,911 _A0970 Rru_A0971: Rru_A0971 - hypothetical protein (NCBI), at 1,155,908 to 1,157,548 _A0971 Position (kb) 1155 1156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1154.450 kb on - strand, within Rru_A0969at 1154.674 kb on + strand, within Rru_A0969at 1155.031 kb on + strand, within Rru_A0969at 1155.105 kb on + strandat 1155.106 kb on - strandat 1155.106 kb on - strandat 1155.106 kb on - strandat 1155.215 kb on - strandat 1155.215 kb on - strandat 1155.400 kb on - strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1156.463 kb on - strand, within Rru_A0971at 1156.463 kb on - strand, within Rru_A0971at 1156.880 kb on - strand, within Rru_A0971

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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1,154,450 - Rru_A0969 0.39 -0.1
1,154,674 + Rru_A0969 0.57 -1.9
1,155,031 + Rru_A0969 0.85 -0.4
1,155,105 + +0.3
1,155,106 - +0.2
1,155,106 - -0.4
1,155,106 - -0.9
1,155,215 - +3.6
1,155,215 - +0.5
1,155,400 - Rru_A0970 0.21 -1.3
1,155,693 + Rru_A0970 0.66 -0.7
1,155,693 + Rru_A0970 0.66 +0.5
1,155,693 + Rru_A0970 0.66 -0.4
1,155,693 + Rru_A0970 0.66 +0.3
1,155,694 - Rru_A0970 0.67 -0.3
1,155,694 - Rru_A0970 0.67 +2.3
1,155,694 - Rru_A0970 0.67 -0.9
1,155,694 - Rru_A0970 0.67 +0.1
1,155,694 - Rru_A0970 0.67 -0.5
1,155,694 - Rru_A0970 0.67 +0.3
1,155,694 - Rru_A0970 0.67 -0.0
1,155,694 - Rru_A0970 0.67 +0.5
1,155,694 - Rru_A0970 0.67 +0.2
1,156,463 - Rru_A0971 0.34 +0.1
1,156,463 - Rru_A0971 0.34 -1.0
1,156,880 - Rru_A0971 0.59 -1.9

Or see this region's nucleotide sequence