Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0603

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0601 and Rru_A0602 are separated by 65 nucleotidesRru_A0602 and Rru_A0603 overlap by 4 nucleotidesRru_A0603 and Rru_A0604 are separated by 13 nucleotidesRru_A0604 and Rru_A0605 are separated by 111 nucleotides Rru_A0601: Rru_A0601 - Phosphate transport system permease protein 1 (NCBI), at 714,844 to 715,590 _A0601 Rru_A0602: Rru_A0602 - Phosphate uptake regulator, PhoU (NCBI), at 715,656 to 716,387 _A0602 Rru_A0603: Rru_A0603 - Two component Transcriptional regulator, Winged helix family (NCBI), at 716,384 to 717,085 _A0603 Rru_A0604: Rru_A0604 - hypothetical protein (NCBI), at 717,099 to 717,278 _A0604 Rru_A0605: Rru_A0605 - hypothetical protein (NCBI), at 717,390 to 718,445 _A0605 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 715.424 kb on - strand, within Rru_A0601at 715.651 kb on + strandat 715.651 kb on + strandat 715.651 kb on + strandat 715.651 kb on + strandat 715.651 kb on + strandat 715.652 kb on - strandat 715.956 kb on + strand, within Rru_A0602at 715.957 kb on - strand, within Rru_A0602at 716.066 kb on + strand, within Rru_A0602at 716.067 kb on - strand, within Rru_A0602at 716.079 kb on + strand, within Rru_A0602at 716.079 kb on + strand, within Rru_A0602at 716.079 kb on + strand, within Rru_A0602at 716.080 kb on - strand, within Rru_A0602at 716.145 kb on + strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.146 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.176 kb on - strand, within Rru_A0602at 716.210 kb on + strand, within Rru_A0602at 716.211 kb on - strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.286 kb on + strand, within Rru_A0602at 716.287 kb on - strand, within Rru_A0602at 716.287 kb on - strand, within Rru_A0602at 716.442 kb on - strandat 716.443 kb on + strandat 716.687 kb on + strand, within Rru_A0603at 716.688 kb on - strand, within Rru_A0603at 716.690 kb on - strand, within Rru_A0603at 716.690 kb on - strand, within Rru_A0603at 716.783 kb on + strand, within Rru_A0603at 716.784 kb on - strand, within Rru_A0603at 716.837 kb on + strand, within Rru_A0603at 716.838 kb on - strand, within Rru_A0603at 716.838 kb on - strand, within Rru_A0603at 716.838 kb on - strand, within Rru_A0603at 716.948 kb on + strand, within Rru_A0603at 717.083 kb on + strandat 717.083 kb on + strandat 717.083 kb on + strandat 717.084 kb on - strandat 717.084 kb on - strandat 717.283 kb on - strandat 717.296 kb on + strandat 717.317 kb on - strandat 717.585 kb on - strand, within Rru_A0605at 717.860 kb on + strand, within Rru_A0605at 717.894 kb on + strand, within Rru_A0605at 717.894 kb on + strand, within Rru_A0605at 717.895 kb on - strand, within Rru_A0605at 717.895 kb on - strand, within Rru_A0605at 717.984 kb on + strand, within Rru_A0605at 717.985 kb on - strand, within Rru_A0605

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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715,424 - Rru_A0601 0.78 +0.7
715,651 + -0.5
715,651 + -0.6
715,651 + +0.2
715,651 + -0.3
715,651 + +0.4
715,652 - +0.6
715,956 + Rru_A0602 0.41 +0.1
715,957 - Rru_A0602 0.41 -2.0
716,066 + Rru_A0602 0.56 -0.9
716,067 - Rru_A0602 0.56 +0.2
716,079 + Rru_A0602 0.58 -0.6
716,079 + Rru_A0602 0.58 -0.9
716,079 + Rru_A0602 0.58 -1.4
716,080 - Rru_A0602 0.58 -3.0
716,145 + Rru_A0602 0.67 -0.3
716,146 - Rru_A0602 0.67 +0.1
716,146 - Rru_A0602 0.67 +0.5
716,146 - Rru_A0602 0.67 -0.2
716,146 - Rru_A0602 0.67 +0.1
716,176 - Rru_A0602 0.71 +0.4
716,176 - Rru_A0602 0.71 +0.3
716,176 - Rru_A0602 0.71 +1.1
716,176 - Rru_A0602 0.71 +0.4
716,210 + Rru_A0602 0.76 -0.6
716,211 - Rru_A0602 0.76 -2.6
716,286 + Rru_A0602 0.86 -0.8
716,286 + Rru_A0602 0.86 -0.8
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -0.2
716,286 + Rru_A0602 0.86 -0.1
716,286 + Rru_A0602 0.86 -0.8
716,286 + Rru_A0602 0.86 -0.4
716,286 + Rru_A0602 0.86 -0.4
716,287 - Rru_A0602 0.86 +0.3
716,287 - Rru_A0602 0.86 -0.7
716,442 - +1.2
716,443 + -0.0
716,687 + Rru_A0603 0.43 -0.6
716,688 - Rru_A0603 0.43 +0.7
716,690 - Rru_A0603 0.44 -0.4
716,690 - Rru_A0603 0.44 -0.2
716,783 + Rru_A0603 0.57 +0.4
716,784 - Rru_A0603 0.57 -0.6
716,837 + Rru_A0603 0.65 +1.8
716,838 - Rru_A0603 0.65 -0.2
716,838 - Rru_A0603 0.65 +1.2
716,838 - Rru_A0603 0.65 -2.5
716,948 + Rru_A0603 0.80 -0.0
717,083 + +1.2
717,083 + +1.0
717,083 + -0.0
717,084 - +0.6
717,084 - +0.4
717,283 - +0.1
717,296 + -0.1
717,317 - -0.6
717,585 - Rru_A0605 0.18 +0.8
717,860 + Rru_A0605 0.45 +1.7
717,894 + Rru_A0605 0.48 +1.6
717,894 + Rru_A0605 0.48 -0.5
717,895 - Rru_A0605 0.48 -0.3
717,895 - Rru_A0605 0.48 -0.4
717,984 + Rru_A0605 0.56 +0.8
717,985 - Rru_A0605 0.56 +1.0

Or see this region's nucleotide sequence