Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0492

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0490 and Rru_A0491 overlap by 4 nucleotidesRru_A0491 and Rru_A0492 overlap by 26 nucleotidesRru_A0492 and Rru_A0493 are separated by 67 nucleotides Rru_A0490: Rru_A0490 - transport system permease protein (NCBI), at 576,212 to 577,213 _A0490 Rru_A0491: Rru_A0491 - ABC transporter component (NCBI), at 577,210 to 578,013 _A0491 Rru_A0492: Rru_A0492 - hypothetical protein (NCBI), at 577,988 to 578,740 _A0492 Rru_A0493: Rru_A0493 - Phytoene desaturase (NCBI), at 578,808 to 580,331 _A0493 Position (kb) 577 578 579Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 577.210 kb on - strandat 577.210 kb on - strandat 577.210 kb on - strandat 577.210 kb on - strandat 577.447 kb on + strand, within Rru_A0491at 577.447 kb on + strand, within Rru_A0491at 577.447 kb on + strand, within Rru_A0491at 577.447 kb on + strand, within Rru_A0491at 577.448 kb on - strand, within Rru_A0491at 577.448 kb on - strand, within Rru_A0491at 577.448 kb on - strand, within Rru_A0491at 577.448 kb on - strand, within Rru_A0491at 577.824 kb on + strand, within Rru_A0491at 577.824 kb on + strand, within Rru_A0491at 577.825 kb on - strand, within Rru_A0491at 577.825 kb on - strand, within Rru_A0491at 577.912 kb on + strand, within Rru_A0491at 577.912 kb on + strand, within Rru_A0491at 577.989 kb on + strandat 577.989 kb on + strandat 577.990 kb on - strandat 578.047 kb on - strandat 578.080 kb on + strand, within Rru_A0492at 578.095 kb on - strand, within Rru_A0492at 578.284 kb on + strand, within Rru_A0492at 578.284 kb on + strand, within Rru_A0492at 578.284 kb on + strand, within Rru_A0492at 578.285 kb on - strand, within Rru_A0492at 578.285 kb on - strand, within Rru_A0492at 578.285 kb on - strand, within Rru_A0492at 578.764 kb on - strandat 578.764 kb on - strandat 578.777 kb on + strandat 578.778 kb on - strandat 578.796 kb on + strandat 579.111 kb on - strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.239 kb on + strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.240 kb on - strand, within Rru_A0493at 579.243 kb on + strand, within Rru_A0493at 579.243 kb on + strand, within Rru_A0493at 579.243 kb on + strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.244 kb on - strand, within Rru_A0493at 579.245 kb on + strand, within Rru_A0493at 579.450 kb on + strand, within Rru_A0493at 579.451 kb on - strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.569 kb on + strand, within Rru_A0493

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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577,210 - -2.9
577,210 - -1.0
577,210 - +0.9
577,210 - +0.7
577,447 + Rru_A0491 0.29 -0.8
577,447 + Rru_A0491 0.29 -0.6
577,447 + Rru_A0491 0.29 -1.0
577,447 + Rru_A0491 0.29 +0.1
577,448 - Rru_A0491 0.30 +0.6
577,448 - Rru_A0491 0.30 -0.3
577,448 - Rru_A0491 0.30 -2.2
577,448 - Rru_A0491 0.30 -0.5
577,824 + Rru_A0491 0.76 -0.2
577,824 + Rru_A0491 0.76 -0.1
577,825 - Rru_A0491 0.76 +0.1
577,825 - Rru_A0491 0.76 -0.3
577,912 + Rru_A0491 0.87 -0.1
577,912 + Rru_A0491 0.87 +0.5
577,989 + -3.1
577,989 + -0.0
577,990 - -0.5
578,047 - +0.3
578,080 + Rru_A0492 0.12 +0.5
578,095 - Rru_A0492 0.14 +0.7
578,284 + Rru_A0492 0.39 +1.7
578,284 + Rru_A0492 0.39 -0.4
578,284 + Rru_A0492 0.39 +0.2
578,285 - Rru_A0492 0.39 +0.7
578,285 - Rru_A0492 0.39 -0.9
578,285 - Rru_A0492 0.39 +0.5
578,764 - -2.4
578,764 - -1.8
578,777 + +0.1
578,778 - +0.3
578,796 + -0.1
579,111 - Rru_A0493 0.20 -1.6
579,239 + Rru_A0493 0.28 +1.4
579,239 + Rru_A0493 0.28 -3.9
579,239 + Rru_A0493 0.28 -2.8
579,239 + Rru_A0493 0.28 -3.8
579,239 + Rru_A0493 0.28 -4.1
579,239 + Rru_A0493 0.28 -1.5
579,239 + Rru_A0493 0.28 -1.6
579,239 + Rru_A0493 0.28 -4.0
579,240 - Rru_A0493 0.28 -2.2
579,240 - Rru_A0493 0.28 -2.3
579,240 - Rru_A0493 0.28 -3.6
579,240 - Rru_A0493 0.28 -0.4
579,240 - Rru_A0493 0.28 -0.2
579,240 - Rru_A0493 0.28 -1.9
579,240 - Rru_A0493 0.28 -2.4
579,243 + Rru_A0493 0.29 -2.1
579,243 + Rru_A0493 0.29 -2.6
579,243 + Rru_A0493 0.29 -0.2
579,244 - Rru_A0493 0.29 -0.4
579,244 - Rru_A0493 0.29 -1.9
579,244 - Rru_A0493 0.29 -3.3
579,244 - Rru_A0493 0.29 +2.4
579,244 - Rru_A0493 0.29 -0.3
579,244 - Rru_A0493 0.29 -0.2
579,244 - Rru_A0493 0.29 -4.0
579,244 - Rru_A0493 0.29 -2.7
579,244 - Rru_A0493 0.29 -2.5
579,244 - Rru_A0493 0.29 -3.1
579,244 - Rru_A0493 0.29 -0.8
579,245 + Rru_A0493 0.29 -2.8
579,450 + Rru_A0493 0.42 -3.4
579,451 - Rru_A0493 0.42 -0.9
579,512 + Rru_A0493 0.46 -3.0
579,512 + Rru_A0493 0.46 -2.5
579,512 + Rru_A0493 0.46 -1.1
579,512 + Rru_A0493 0.46 -5.4
579,512 + Rru_A0493 0.46 -1.9
579,512 + Rru_A0493 0.46 -4.3
579,513 - Rru_A0493 0.46 -0.1
579,513 - Rru_A0493 0.46 -3.2
579,513 - Rru_A0493 0.46 -2.1
579,513 - Rru_A0493 0.46 -2.6
579,568 - Rru_A0493 0.50 -4.0
579,568 - Rru_A0493 0.50 -1.1
579,569 + Rru_A0493 0.50 -2.3

Or see this region's nucleotide sequence