Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0482

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0481 and Rru_A0482 are separated by 244 nucleotidesRru_A0482 and Rru_A0483 are separated by 355 nucleotidesRru_A0483 and Rru_A0484 are separated by 7 nucleotides Rru_A0481: Rru_A0481 - hypothetical protein (NCBI), at 564,071 to 565,939 _A0481 Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864 _A0482 Rru_A0483: Rru_A0483 - hypothetical protein (NCBI), at 567,220 to 567,480 _A0483 Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483 _A0484 Position (kb) 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1at 565.349 kb on - strand, within Rru_A0481at 565.362 kb on + strand, within Rru_A0481at 565.362 kb on + strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.383 kb on + strand, within Rru_A0481at 565.384 kb on - strand, within Rru_A0481at 565.423 kb on - strand, within Rru_A0481at 565.579 kb on - strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.699 kb on - strand, within Rru_A0481at 565.699 kb on - strand, within Rru_A0481at 565.746 kb on + strand, within Rru_A0481at 565.746 kb on + strand, within Rru_A0481at 565.746 kb on + strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.833 kb on - strandat 565.957 kb on - strandat 566.185 kb on + strandat 566.186 kb on - strandat 566.186 kb on - strandat 566.233 kb on + strandat 566.233 kb on + strandat 566.234 kb on - strandat 566.328 kb on - strand, within Rru_A0482at 566.434 kb on + strand, within Rru_A0482at 566.434 kb on + strand, within Rru_A0482at 566.435 kb on - strand, within Rru_A0482at 566.444 kb on + strand, within Rru_A0482at 566.444 kb on + strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.669 kb on - strand, within Rru_A0482at 566.669 kb on - strand, within Rru_A0482at 566.707 kb on - strand, within Rru_A0482at 566.810 kb on + strandat 566.810 kb on + strandat 566.811 kb on - strandat 566.811 kb on - strandat 566.840 kb on + strandat 566.840 kb on + strandat 566.841 kb on - strandat 566.841 kb on - strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.865 kb on - strandat 566.865 kb on - strandat 566.865 kb on - strandat 566.897 kb on - strandat 566.993 kb on - strandat 566.994 kb on + strandat 566.994 kb on + strandat 566.995 kb on - strandat 567.093 kb on + strandat 567.093 kb on + strandat 567.094 kb on - strandat 567.122 kb on - strandat 567.215 kb on - strandat 567.215 kb on - strandat 567.403 kb on + strand, within Rru_A0483at 567.404 kb on - strand, within Rru_A0483at 567.404 kb on - strand, within Rru_A0483at 567.432 kb on + strand, within Rru_A0483at 567.438 kb on - strand, within Rru_A0483at 567.630 kb on + strand, within Rru_A0484at 567.631 kb on - strand, within Rru_A0484at 567.631 kb on - strand, within Rru_A0484

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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565,349 - Rru_A0481 0.68 -1.2
565,362 + Rru_A0481 0.69 -0.1
565,362 + Rru_A0481 0.69 +1.7
565,363 - Rru_A0481 0.69 +0.0
565,363 - Rru_A0481 0.69 +0.1
565,363 - Rru_A0481 0.69 -0.1
565,363 - Rru_A0481 0.69 -0.1
565,383 + Rru_A0481 0.70 +0.9
565,384 - Rru_A0481 0.70 +0.0
565,423 - Rru_A0481 0.72 +0.4
565,579 - Rru_A0481 0.81 +0.6
565,698 + Rru_A0481 0.87 +0.7
565,698 + Rru_A0481 0.87 +0.3
565,698 + Rru_A0481 0.87 -0.1
565,698 + Rru_A0481 0.87 -1.9
565,699 - Rru_A0481 0.87 +0.2
565,699 - Rru_A0481 0.87 +0.4
565,746 + Rru_A0481 0.90 -3.1
565,746 + Rru_A0481 0.90 -2.1
565,746 + Rru_A0481 0.90 -0.9
565,747 - Rru_A0481 0.90 +0.2
565,747 - Rru_A0481 0.90 -1.1
565,747 - Rru_A0481 0.90 -0.3
565,747 - Rru_A0481 0.90 -0.2
565,747 - Rru_A0481 0.90 +1.2
565,833 - +0.0
565,957 - +0.1
566,185 + -1.0
566,186 - -0.1
566,186 - +0.5
566,233 + -0.2
566,233 + +1.0
566,234 - +0.4
566,328 - Rru_A0482 0.21 +0.0
566,434 + Rru_A0482 0.37 -0.8
566,434 + Rru_A0482 0.37 +0.1
566,435 - Rru_A0482 0.37 +0.4
566,444 + Rru_A0482 0.38 +0.1
566,444 + Rru_A0482 0.38 +0.9
566,445 - Rru_A0482 0.38 -0.1
566,445 - Rru_A0482 0.38 +1.3
566,445 - Rru_A0482 0.38 +0.4
566,445 - Rru_A0482 0.38 +0.8
566,669 - Rru_A0482 0.71 +0.1
566,669 - Rru_A0482 0.71 -1.1
566,707 - Rru_A0482 0.77 +0.6
566,810 + +0.6
566,810 + -1.6
566,811 - -0.0
566,811 - -0.8
566,840 + +0.7
566,840 + +0.6
566,841 - +0.6
566,841 - +1.2
566,864 + +0.2
566,864 + +0.1
566,864 + -0.8
566,864 + +0.7
566,864 + +0.5
566,865 - +0.5
566,865 - +0.1
566,865 - -1.1
566,897 - -0.0
566,993 - +0.2
566,994 + +0.5
566,994 + +0.2
566,995 - -0.6
567,093 + +0.2
567,093 + -0.2
567,094 - +0.0
567,122 - +0.1
567,215 - +0.1
567,215 - -0.0
567,403 + Rru_A0483 0.70 +1.6
567,404 - Rru_A0483 0.70 -0.1
567,404 - Rru_A0483 0.70 +0.9
567,432 + Rru_A0483 0.81 -0.8
567,438 - Rru_A0483 0.84 +1.1
567,630 + Rru_A0484 0.14 -1.1
567,631 - Rru_A0484 0.14 -0.7
567,631 - Rru_A0484 0.14 -1.5

Or see this region's nucleotide sequence