Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0274 and Rru_A0275 are separated by 200 nucleotides Rru_A0275 and Rru_A0276 are separated by 364 nucleotides
Rru_A0274: Rru_A0274 - Acetyl-CoA C-acetyltransferase (NCBI), at 338,303 to 339,475
_A0274
Rru_A0275: Rru_A0275 - Alpha/beta hydrolase fold (NCBI), at 339,676 to 340,920
_A0275
Rru_A0276: Rru_A0276 - Polyhydroxyalkanoate synthesis repressor PhaR (NCBI), at 341,285 to 341,890
_A0276
Position (kb) 339
340
341 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 339.099 kb on + strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.231 kb on + strand, within Rru_A0274 at 339.413 kb on + strand at 339.414 kb on - strand at 339.424 kb on + strand at 339.443 kb on - strand at 339.443 kb on - strand at 339.720 kb on - strand at 339.944 kb on + strand, within Rru_A0275 at 340.158 kb on + strand, within Rru_A0275 at 340.307 kb on + strand, within Rru_A0275 at 340.383 kb on - strand, within Rru_A0275 at 340.383 kb on - strand, within Rru_A0275 at 340.565 kb on + strand, within Rru_A0275 at 340.566 kb on - strand, within Rru_A0275 at 340.628 kb on + strand, within Rru_A0275 at 340.629 kb on - strand, within Rru_A0275 at 340.629 kb on - strand, within Rru_A0275 at 340.643 kb on + strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.738 kb on - strand, within Rru_A0275 at 341.043 kb on + strand at 341.043 kb on + strand at 341.043 kb on + strand at 341.043 kb on + strand at 341.044 kb on - strand at 341.113 kb on + strand at 341.119 kb on - strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 339,099 + Rru_A0274 0.68 -4.1 339,100 - Rru_A0274 0.68 -3.6 339,100 - Rru_A0274 0.68 -2.3 339,100 - Rru_A0274 0.68 -2.9 339,100 - Rru_A0274 0.68 -2.6 339,231 + Rru_A0274 0.79 -2.5 339,413 + -2.7 339,414 - -2.9 339,424 + -2.1 339,443 - -1.4 339,443 - -1.2 339,720 - +0.4 339,944 + Rru_A0275 0.22 +1.3 340,158 + Rru_A0275 0.39 +1.2 340,307 + Rru_A0275 0.51 +2.6 340,383 - Rru_A0275 0.57 +1.1 340,383 - Rru_A0275 0.57 -0.1 340,565 + Rru_A0275 0.71 +0.1 340,566 - Rru_A0275 0.71 -1.0 340,628 + Rru_A0275 0.76 +0.6 340,629 - Rru_A0275 0.77 +1.0 340,629 - Rru_A0275 0.77 +1.5 340,643 + Rru_A0275 0.78 +0.3 340,644 - Rru_A0275 0.78 +1.0 340,644 - Rru_A0275 0.78 +0.7 340,644 - Rru_A0275 0.78 +0.5 340,644 - Rru_A0275 0.78 +1.2 340,644 - Rru_A0275 0.78 +0.9 340,738 - Rru_A0275 0.85 -2.3 341,043 + +0.4 341,043 + -0.9 341,043 + -0.2 341,043 + +1.7 341,044 - +0.8 341,113 + +0.9 341,119 - -0.7 341,195 + +0.4 341,195 + -2.8 341,195 + +0.4 341,195 + -0.1 341,201 + +1.3 341,201 + +1.4 341,201 + +0.3 341,237 + -0.2
Or see this region's nucleotide sequence