Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0241 and Rru_A0242 are separated by 14 nucleotides Rru_A0242 and Rru_A0243 are separated by 375 nucleotides
Rru_A0241: Rru_A0241 - DNA methylase N-4/N-6 (NCBI), at 295,221 to 298,040
_A0241
Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099
_A0242
Rru_A0243: Rru_A0243 - tRNA/rRNA cytosine-C5-methylase (NCBI), at 301,475 to 302,839
_A0243
Position (kb) 298
299
300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 297.056 kb on + strand, within Rru_A0241 at 297.061 kb on - strand, within Rru_A0241 at 297.078 kb on + strand, within Rru_A0241 at 297.173 kb on + strand, within Rru_A0241 at 297.264 kb on + strand, within Rru_A0241 at 297.265 kb on - strand, within Rru_A0241 at 297.406 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.415 kb on + strand, within Rru_A0241 at 297.416 kb on - strand, within Rru_A0241 at 297.416 kb on - strand, within Rru_A0241 at 297.569 kb on - strand, within Rru_A0241 at 297.569 kb on - strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.676 kb on + strand, within Rru_A0241 at 297.677 kb on - strand, within Rru_A0241 at 297.677 kb on - strand, within Rru_A0241 at 297.677 kb on - strand, within Rru_A0241 at 297.822 kb on - strand at 297.822 kb on - strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.919 kb on + strand at 297.919 kb on + strand at 298.040 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.185 kb on + strand at 298.186 kb on - strand at 298.186 kb on - strand at 298.306 kb on - strand at 298.306 kb on - strand at 298.369 kb on - strand, within Rru_A0242 at 298.495 kb on + strand, within Rru_A0242 at 298.495 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.530 kb on + strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.531 kb on - strand, within Rru_A0242 at 298.560 kb on + strand, within Rru_A0242 at 298.582 kb on + strand, within Rru_A0242 at 298.627 kb on - strand, within Rru_A0242 at 298.759 kb on - strand, within Rru_A0242 at 298.759 kb on - strand, within Rru_A0242 at 298.807 kb on + strand, within Rru_A0242 at 298.808 kb on - strand, within Rru_A0242 at 299.100 kb on + strand, within Rru_A0242 at 299.100 kb on + strand, within Rru_A0242 at 299.365 kb on + strand, within Rru_A0242 at 299.520 kb on + strand, within Rru_A0242 at 299.587 kb on - strand, within Rru_A0242 at 299.633 kb on - strand, within Rru_A0242 at 299.633 kb on - strand, within Rru_A0242 at 299.712 kb on + strand, within Rru_A0242 at 299.712 kb on + strand, within Rru_A0242 at 299.713 kb on - strand, within Rru_A0242 at 299.713 kb on - strand, within Rru_A0242 at 299.753 kb on + strand, within Rru_A0242 at 299.754 kb on - strand, within Rru_A0242 at 299.809 kb on + strand, within Rru_A0242 at 299.810 kb on - strand, within Rru_A0242 at 299.824 kb on + strand, within Rru_A0242 at 299.824 kb on + strand, within Rru_A0242 at 300.284 kb on + strand, within Rru_A0242 at 300.285 kb on - strand, within Rru_A0242 at 300.285 kb on - strand, within Rru_A0242 at 300.318 kb on + strand, within Rru_A0242 at 300.318 kb on + strand, within Rru_A0242 at 300.318 kb on + strand, within Rru_A0242 at 300.319 kb on - strand, within Rru_A0242 at 300.319 kb on - strand, within Rru_A0242 at 300.361 kb on + strand, within Rru_A0242 at 300.361 kb on + strand, within Rru_A0242 at 300.361 kb on + strand, within Rru_A0242 at 300.362 kb on - strand, within Rru_A0242 at 300.393 kb on + strand, within Rru_A0242 at 300.394 kb on - strand, within Rru_A0242 at 300.394 kb on - strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.702 kb on - strand, within Rru_A0242 at 300.861 kb on + strand at 300.862 kb on - strand at 301.057 kb on - strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.118 kb on - strand at 301.138 kb on + strand at 301.138 kb on + strand at 301.139 kb on - strand at 301.185 kb on + strand at 301.186 kb on - strand at 301.208 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.221 kb on - strand at 301.221 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.406 kb on + strand at 301.407 kb on - strand at 301.407 kb on - strand at 301.407 kb on - strand at 301.417 kb on + strand at 301.417 kb on + strand at 301.418 kb on - strand at 301.418 kb on - strand at 301.477 kb on - strand at 301.672 kb on - strand, within Rru_A0243 at 301.744 kb on - strand, within Rru_A0243 at 301.744 kb on - strand, within Rru_A0243 at 301.939 kb on + strand, within Rru_A0243 at 301.976 kb on - strand, within Rru_A0243 at 302.033 kb on - strand, within Rru_A0243
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 297,056 + Rru_A0241 0.65 +1.3 297,061 - Rru_A0241 0.65 -0.2 297,078 + Rru_A0241 0.66 -0.2 297,173 + Rru_A0241 0.69 -0.8 297,264 + Rru_A0241 0.72 +0.9 297,265 - Rru_A0241 0.72 -0.2 297,406 + Rru_A0241 0.77 -2.8 297,415 + Rru_A0241 0.78 -0.4 297,415 + Rru_A0241 0.78 -0.7 297,415 + Rru_A0241 0.78 +0.4 297,415 + Rru_A0241 0.78 +1.3 297,415 + Rru_A0241 0.78 +0.3 297,415 + Rru_A0241 0.78 -0.1 297,415 + Rru_A0241 0.78 -0.5 297,415 + Rru_A0241 0.78 -0.7 297,416 - Rru_A0241 0.78 +0.1 297,416 - Rru_A0241 0.78 +0.4 297,569 - Rru_A0241 0.83 -0.3 297,569 - Rru_A0241 0.83 -1.4 297,676 + Rru_A0241 0.87 +1.1 297,676 + Rru_A0241 0.87 -0.0 297,676 + Rru_A0241 0.87 +1.1 297,676 + Rru_A0241 0.87 -0.3 297,677 - Rru_A0241 0.87 -0.4 297,677 - Rru_A0241 0.87 -0.7 297,677 - Rru_A0241 0.87 -1.9 297,822 - +0.5 297,822 - -0.0 297,823 + -0.7 297,823 + +0.9 297,823 + +0.1 297,823 + -1.0 297,823 + +0.1 297,824 - +0.5 297,824 - -0.5 297,919 + -2.2 297,919 + -1.2 298,040 + -1.7 298,185 + +1.3 298,185 + -0.5 298,185 + +0.9 298,185 + -2.8 298,185 + +1.2 298,186 - -0.3 298,186 - -0.5 298,306 - -0.1 298,306 - +1.1 298,369 - Rru_A0242 0.10 +0.2 298,495 + Rru_A0242 0.14 -0.0 298,495 + Rru_A0242 0.14 +0.2 298,530 + Rru_A0242 0.16 -0.7 298,530 + Rru_A0242 0.16 -0.3 298,530 + Rru_A0242 0.16 -0.0 298,530 + Rru_A0242 0.16 +0.3 298,530 + Rru_A0242 0.16 +0.6 298,531 - Rru_A0242 0.16 +0.9 298,531 - Rru_A0242 0.16 +2.2 298,531 - Rru_A0242 0.16 +1.0 298,531 - Rru_A0242 0.16 +0.6 298,560 + Rru_A0242 0.17 +0.3 298,582 + Rru_A0242 0.17 -0.1 298,627 - Rru_A0242 0.19 +0.9 298,759 - Rru_A0242 0.23 -1.3 298,759 - Rru_A0242 0.23 -0.3 298,807 + Rru_A0242 0.25 -1.3 298,808 - Rru_A0242 0.25 +0.4 299,100 + Rru_A0242 0.34 +1.5 299,100 + Rru_A0242 0.34 +1.4 299,365 + Rru_A0242 0.43 +0.4 299,520 + Rru_A0242 0.48 +0.3 299,587 - Rru_A0242 0.50 -1.2 299,633 - Rru_A0242 0.52 -0.0 299,633 - Rru_A0242 0.52 +0.2 299,712 + Rru_A0242 0.54 -1.3 299,712 + Rru_A0242 0.54 -0.6 299,713 - Rru_A0242 0.54 +1.0 299,713 - Rru_A0242 0.54 -0.2 299,753 + Rru_A0242 0.56 +0.5 299,754 - Rru_A0242 0.56 +0.7 299,809 + Rru_A0242 0.58 -0.6 299,810 - Rru_A0242 0.58 +0.1 299,824 + Rru_A0242 0.58 -0.1 299,824 + Rru_A0242 0.58 +0.4 300,284 + Rru_A0242 0.73 +0.5 300,285 - Rru_A0242 0.73 -0.9 300,285 - Rru_A0242 0.73 +1.2 300,318 + Rru_A0242 0.74 -1.8 300,318 + Rru_A0242 0.74 -0.8 300,318 + Rru_A0242 0.74 -1.0 300,319 - Rru_A0242 0.74 -0.4 300,319 - Rru_A0242 0.74 -0.5 300,361 + Rru_A0242 0.76 +0.3 300,361 + Rru_A0242 0.76 +0.2 300,361 + Rru_A0242 0.76 +0.4 300,362 - Rru_A0242 0.76 -0.7 300,393 + Rru_A0242 0.77 -0.2 300,394 - Rru_A0242 0.77 +0.5 300,394 - Rru_A0242 0.77 -1.6 300,598 + Rru_A0242 0.84 -1.5 300,598 + Rru_A0242 0.84 -0.2 300,598 + Rru_A0242 0.84 -0.7 300,701 + Rru_A0242 0.87 -0.7 300,701 + Rru_A0242 0.87 +0.1 300,701 + Rru_A0242 0.87 -2.5 300,701 + Rru_A0242 0.87 +0.1 300,701 + Rru_A0242 0.87 -0.6 300,701 + Rru_A0242 0.87 -0.0 300,702 - Rru_A0242 0.87 +0.7 300,861 + +1.4 300,862 - +0.0 301,057 - +0.4 301,066 + -2.2 301,066 + +0.6 301,066 + +0.5 301,066 + +0.3 301,117 + -2.9 301,117 + -1.2 301,117 + -1.5 301,117 + -0.5 301,118 - -0.3 301,138 + -0.5 301,138 + +0.2 301,139 - +0.4 301,185 + +0.1 301,186 - +0.1 301,208 + -0.1 301,220 + +0.2 301,220 + -0.0 301,220 + -0.3 301,220 + +0.1 301,221 - -1.5 301,221 - +0.2 301,364 - -1.9 301,364 - -0.2 301,364 - -0.9 301,406 + +0.4 301,407 - -0.2 301,407 - +0.0 301,407 - -0.6 301,417 + -0.4 301,417 + +0.9 301,418 - +1.2 301,418 - +2.4 301,477 - -0.3 301,672 - Rru_A0243 0.14 +0.8 301,744 - Rru_A0243 0.20 +0.1 301,744 - Rru_A0243 0.20 +1.0 301,939 + Rru_A0243 0.34 +1.0 301,976 - Rru_A0243 0.37 -0.1 302,033 - Rru_A0243 0.41 +0.7
Or see this region's nucleotide sequence