Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0226 and Rru_A0227 are separated by 116 nucleotides Rru_A0227 and Rru_A0228 overlap by 4 nucleotides Rru_A0228 and Rru_A0229 are separated by 59 nucleotides
Rru_A0226: Rru_A0226 - Major facilitator superfamily MFS_1 (NCBI), at 278,290 to 279,630
_A0226
Rru_A0227: Rru_A0227 - hypothetical protein (NCBI), at 279,747 to 280,085
_A0227
Rru_A0228: Rru_A0228 - Twin-arginine translocation pathway signal (NCBI), at 280,082 to 280,984
_A0228
Rru_A0229: Rru_A0229 - Glycosyl transferase, group 1 (NCBI), at 281,044 to 282,474
_A0229
Position (kb) 280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.212 kb on + strand, within Rru_A0226 at 279.225 kb on + strand, within Rru_A0226 at 279.225 kb on + strand, within Rru_A0226 at 279.226 kb on - strand, within Rru_A0226 at 279.226 kb on - strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.270 kb on + strand, within Rru_A0226 at 279.480 kb on - strand, within Rru_A0226 at 279.480 kb on - strand, within Rru_A0226 at 279.482 kb on + strand, within Rru_A0226 at 279.820 kb on + strand, within Rru_A0227 at 279.820 kb on + strand, within Rru_A0227 at 279.821 kb on - strand, within Rru_A0227 at 279.821 kb on - strand, within Rru_A0227 at 279.841 kb on + strand, within Rru_A0227 at 279.841 kb on + strand, within Rru_A0227 at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.487 kb on - strand, within Rru_A0228 at 280.644 kb on + strand, within Rru_A0228 at 280.645 kb on - strand, within Rru_A0228 at 280.805 kb on - strand, within Rru_A0228 at 280.984 kb on + strand at 280.984 kb on + strand at 281.190 kb on + strand, within Rru_A0229 at 281.190 kb on + strand, within Rru_A0229 at 281.191 kb on - strand, within Rru_A0229 at 281.291 kb on - strand, within Rru_A0229 at 281.408 kb on + strand, within Rru_A0229 at 281.447 kb on + strand, within Rru_A0229 at 281.447 kb on + strand, within Rru_A0229 at 281.447 kb on + strand, within Rru_A0229 at 281.448 kb on - strand, within Rru_A0229 at 281.448 kb on - strand, within Rru_A0229 at 281.448 kb on - strand, within Rru_A0229 at 281.567 kb on + strand, within Rru_A0229 at 281.885 kb on + strand, within Rru_A0229 at 281.885 kb on + strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 279,135 - Rru_A0226 0.63 +0.6 279,135 - Rru_A0226 0.63 -1.7 279,135 - Rru_A0226 0.63 -0.3 279,135 - Rru_A0226 0.63 +0.2 279,212 + Rru_A0226 0.69 -0.4 279,225 + Rru_A0226 0.70 -0.3 279,225 + Rru_A0226 0.70 -1.7 279,226 - Rru_A0226 0.70 +0.6 279,226 - Rru_A0226 0.70 +0.4 279,227 + Rru_A0226 0.70 +0.4 279,227 + Rru_A0226 0.70 -0.0 279,227 + Rru_A0226 0.70 +0.6 279,228 - Rru_A0226 0.70 +0.0 279,228 - Rru_A0226 0.70 -1.6 279,228 - Rru_A0226 0.70 -0.0 279,228 - Rru_A0226 0.70 +0.7 279,228 - Rru_A0226 0.70 +0.3 279,270 + Rru_A0226 0.73 -0.4 279,480 - Rru_A0226 0.89 +0.1 279,480 - Rru_A0226 0.89 +0.6 279,482 + Rru_A0226 0.89 +0.8 279,820 + Rru_A0227 0.22 -0.1 279,820 + Rru_A0227 0.22 +0.6 279,821 - Rru_A0227 0.22 -2.3 279,821 - Rru_A0227 0.22 +0.1 279,841 + Rru_A0227 0.28 -1.0 279,841 + Rru_A0227 0.28 -0.2 280,171 + -1.0 280,171 + -2.0 280,171 + +0.3 280,171 + -1.4 280,171 + -0.3 280,171 + +0.4 280,172 - +0.1 280,172 - +0.9 280,172 - +0.4 280,172 - -0.3 280,172 - -0.8 280,172 - -0.2 280,172 - -0.6 280,173 + Rru_A0228 0.10 +0.3 280,173 + Rru_A0228 0.10 -0.1 280,173 + Rru_A0228 0.10 +0.2 280,173 + Rru_A0228 0.10 -0.1 280,174 - Rru_A0228 0.10 -0.6 280,174 - Rru_A0228 0.10 +0.7 280,174 - Rru_A0228 0.10 +1.2 280,174 - Rru_A0228 0.10 +0.4 280,487 - Rru_A0228 0.45 +0.2 280,644 + Rru_A0228 0.62 -3.3 280,645 - Rru_A0228 0.62 +0.5 280,805 - Rru_A0228 0.80 -0.1 280,984 + -0.1 280,984 + -0.1 281,190 + Rru_A0229 0.10 +0.1 281,190 + Rru_A0229 0.10 +0.0 281,191 - Rru_A0229 0.10 -1.0 281,291 - Rru_A0229 0.17 -0.1 281,408 + Rru_A0229 0.25 -1.3 281,447 + Rru_A0229 0.28 -0.3 281,447 + Rru_A0229 0.28 -0.8 281,447 + Rru_A0229 0.28 -0.4 281,448 - Rru_A0229 0.28 -2.3 281,448 - Rru_A0229 0.28 -0.8 281,448 - Rru_A0229 0.28 +1.0 281,567 + Rru_A0229 0.37 -1.0 281,885 + Rru_A0229 0.59 +0.1 281,885 + Rru_A0229 0.59 -0.8 281,886 - Rru_A0229 0.59 -1.5 281,886 - Rru_A0229 0.59 -1.3 281,886 - Rru_A0229 0.59 +0.4 281,886 - Rru_A0229 0.59 +1.3
Or see this region's nucleotide sequence