Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0162 and Rru_A0163 are separated by 163 nucleotides Rru_A0163 and Rru_A0164 are separated by 80 nucleotides Rru_A0164 and Rru_AR0004 are separated by 859 nucleotides
Rru_A0162: Rru_A0162 - Chaperonin Cpn60/TCP-1 (NCBI), at 187,808 to 189,439
_A0162
Rru_A0163: Rru_A0163 - Transcriptional Regulator, XRE family (NCBI), at 189,603 to 189,860
_A0163
Rru_A0164: Rru_A0164 - Sulfate transporter/antisigma-factor antagonist (NCBI), at 189,941 to 191,668
_A0164
Rru_AR0004: Rru_AR0004 - 16S ribosomal RNA (NCBI), at 192,528 to 194,004
_AR0004
Position (kb) 189
190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 189.242 kb on + strand, within Rru_A0162 at 189.242 kb on + strand, within Rru_A0162 at 189.242 kb on + strand, within Rru_A0162 at 189.263 kb on + strand, within Rru_A0162 at 189.263 kb on + strand, within Rru_A0162 at 189.263 kb on + strand, within Rru_A0162 at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.437 kb on + strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.438 kb on - strand at 189.495 kb on + strand at 189.525 kb on + strand at 189.525 kb on + strand at 189.543 kb on + strand at 189.549 kb on + strand at 189.549 kb on + strand at 189.580 kb on + strand at 189.580 kb on + strand at 189.581 kb on - strand at 189.581 kb on - strand at 189.727 kb on + strand, within Rru_A0163 at 189.727 kb on + strand, within Rru_A0163 at 189.848 kb on + strand at 189.849 kb on - strand at 190.358 kb on + strand, within Rru_A0164 at 190.358 kb on + strand, within Rru_A0164 at 190.358 kb on + strand, within Rru_A0164 at 190.359 kb on - strand, within Rru_A0164 at 190.359 kb on - strand, within Rru_A0164 at 190.377 kb on - strand, within Rru_A0164 at 190.459 kb on - strand, within Rru_A0164 at 190.654 kb on + strand, within Rru_A0164 at 190.654 kb on + strand, within Rru_A0164 at 190.654 kb on + strand, within Rru_A0164 at 190.654 kb on + strand, within Rru_A0164 at 190.655 kb on - strand, within Rru_A0164 at 190.655 kb on - strand, within Rru_A0164 at 190.655 kb on - strand, within Rru_A0164 at 190.655 kb on - strand, within Rru_A0164 at 190.655 kb on - strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.036 kb on + strand, within Rru_A0164 at 191.037 kb on - strand, within Rru_A0164 at 191.037 kb on - strand, within Rru_A0164 at 191.037 kb on - strand, within Rru_A0164 at 191.037 kb on - strand, within Rru_A0164 at 191.037 kb on - strand, within Rru_A0164 at 191.038 kb on + strand, within Rru_A0164 at 191.039 kb on - strand, within Rru_A0164 at 191.039 kb on - strand, within Rru_A0164 at 191.321 kb on + strand, within Rru_A0164 at 191.321 kb on + strand, within Rru_A0164 at 191.615 kb on + strand at 191.616 kb on - strand at 191.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 189,242 + Rru_A0162 0.88 -0.9 189,242 + Rru_A0162 0.88 -1.3 189,242 + Rru_A0162 0.88 -0.4 189,263 + Rru_A0162 0.89 -0.6 189,263 + Rru_A0162 0.89 +0.2 189,263 + Rru_A0162 0.89 -2.2 189,437 + -0.1 189,437 + +1.4 189,437 + -0.2 189,437 + -0.6 189,437 + -0.3 189,437 + +1.3 189,437 + -2.0 189,437 + -1.4 189,438 - -0.2 189,438 - -0.0 189,438 - -0.2 189,438 - +1.2 189,438 - -2.1 189,438 - -1.1 189,495 + +0.1 189,525 + +0.6 189,525 + -0.0 189,543 + -0.3 189,549 + +0.1 189,549 + -0.6 189,580 + -0.9 189,580 + -0.0 189,581 - -0.3 189,581 - +0.4 189,727 + Rru_A0163 0.48 -0.1 189,727 + Rru_A0163 0.48 -0.3 189,848 + -0.4 189,849 - -0.4 190,358 + Rru_A0164 0.24 -1.1 190,358 + Rru_A0164 0.24 +0.6 190,358 + Rru_A0164 0.24 -1.1 190,359 - Rru_A0164 0.24 -2.2 190,359 - Rru_A0164 0.24 +0.8 190,377 - Rru_A0164 0.25 -1.3 190,459 - Rru_A0164 0.30 -1.0 190,654 + Rru_A0164 0.41 -1.1 190,654 + Rru_A0164 0.41 -1.1 190,654 + Rru_A0164 0.41 -0.6 190,654 + Rru_A0164 0.41 -2.9 190,655 - Rru_A0164 0.41 -1.1 190,655 - Rru_A0164 0.41 -1.5 190,655 - Rru_A0164 0.41 -1.4 190,655 - Rru_A0164 0.41 -1.0 190,655 - Rru_A0164 0.41 +0.1 191,036 + Rru_A0164 0.63 -0.4 191,036 + Rru_A0164 0.63 -2.6 191,036 + Rru_A0164 0.63 -0.9 191,036 + Rru_A0164 0.63 -0.4 191,036 + Rru_A0164 0.63 -0.8 191,036 + Rru_A0164 0.63 -1.1 191,036 + Rru_A0164 0.63 -1.1 191,037 - Rru_A0164 0.63 -1.0 191,037 - Rru_A0164 0.63 -0.8 191,037 - Rru_A0164 0.63 -1.5 191,037 - Rru_A0164 0.63 +0.5 191,037 - Rru_A0164 0.63 +1.4 191,038 + Rru_A0164 0.63 -2.1 191,039 - Rru_A0164 0.64 -1.2 191,039 - Rru_A0164 0.64 +0.1 191,321 + Rru_A0164 0.80 -0.3 191,321 + Rru_A0164 0.80 -0.7 191,615 + -0.4 191,616 - -3.2 191,616 - -3.4
Or see this region's nucleotide sequence