Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0088 and Rru_A0089 are separated by 120 nucleotides Rru_A0089 and Rru_A0090 are separated by 275 nucleotides Rru_A0090 and Rru_A0091 are separated by 3 nucleotides
Rru_A0088: Rru_A0088 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 101,509 to 102,531
_A0088
Rru_A0089: Rru_A0089 - ATP-dependent DNA helicase RecQ (NCBI), at 102,652 to 104,541
_A0089
Rru_A0090: Rru_A0090 - Prevent-host-death protein (NCBI), at 104,817 to 105,059
_A0090
Rru_A0091: Rru_A0091 - PilT protein-like (NCBI), at 105,063 to 105,497
_A0091
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 101.770 kb on + strand, within Rru_A0088 at 101.770 kb on + strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.529 kb on + strand at 102.529 kb on + strand at 102.599 kb on + strand at 102.600 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 103.063 kb on + strand, within Rru_A0089 at 103.063 kb on + strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.190 kb on - strand, within Rru_A0089 at 103.279 kb on - strand, within Rru_A0089 at 103.407 kb on + strand, within Rru_A0089 at 103.429 kb on + strand, within Rru_A0089 at 103.430 kb on - strand, within Rru_A0089 at 103.663 kb on + strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.664 kb on - strand, within Rru_A0089 at 103.666 kb on + strand, within Rru_A0089 at 103.667 kb on - strand, within Rru_A0089 at 103.723 kb on + strand, within Rru_A0089 at 103.723 kb on + strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.724 kb on - strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.910 kb on + strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 103.911 kb on - strand, within Rru_A0089 at 104.016 kb on + strand, within Rru_A0089 at 104.017 kb on - strand, within Rru_A0089 at 104.064 kb on + strand, within Rru_A0089 at 104.395 kb on + strand at 104.395 kb on + strand at 104.395 kb on + strand at 104.706 kb on + strand at 104.706 kb on + strand at 104.707 kb on - strand at 104.707 kb on - strand at 104.751 kb on + strand at 104.751 kb on + strand at 104.752 kb on - strand at 104.752 kb on - strand at 104.752 kb on - strand at 104.752 kb on - strand at 105.066 kb on + strand at 105.066 kb on + strand at 105.066 kb on + strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.279 kb on + strand, within Rru_A0091 at 105.280 kb on - strand, within Rru_A0091 at 105.280 kb on - strand, within Rru_A0091
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 101,770 + Rru_A0088 0.26 -2.6 101,770 + Rru_A0088 0.26 -0.1 101,771 - Rru_A0088 0.26 -0.6 101,771 - Rru_A0088 0.26 -0.1 102,291 + Rru_A0088 0.76 -0.3 102,291 + Rru_A0088 0.76 -1.3 102,292 - Rru_A0088 0.77 -1.2 102,292 - Rru_A0088 0.77 -0.2 102,328 + Rru_A0088 0.80 -0.3 102,328 + Rru_A0088 0.80 -0.7 102,328 + Rru_A0088 0.80 -0.5 102,329 - Rru_A0088 0.80 +0.1 102,329 - Rru_A0088 0.80 +1.2 102,329 - Rru_A0088 0.80 -0.0 102,329 - Rru_A0088 0.80 -0.4 102,529 + -0.8 102,529 + -0.2 102,599 + -0.2 102,600 - +0.1 102,763 - +0.1 102,763 - -2.4 102,763 - -0.9 103,063 + Rru_A0089 0.22 +0.6 103,063 + Rru_A0089 0.22 +0.5 103,064 - Rru_A0089 0.22 -2.4 103,064 - Rru_A0089 0.22 -1.9 103,189 + Rru_A0089 0.28 -0.3 103,189 + Rru_A0089 0.28 +0.1 103,189 + Rru_A0089 0.28 -0.2 103,189 + Rru_A0089 0.28 +0.4 103,189 + Rru_A0089 0.28 -0.5 103,190 - Rru_A0089 0.28 -0.2 103,279 - Rru_A0089 0.33 +0.0 103,407 + Rru_A0089 0.40 -0.5 103,429 + Rru_A0089 0.41 -0.7 103,430 - Rru_A0089 0.41 -0.6 103,663 + Rru_A0089 0.53 +1.1 103,664 - Rru_A0089 0.54 -1.8 103,664 - Rru_A0089 0.54 +1.3 103,664 - Rru_A0089 0.54 -2.8 103,664 - Rru_A0089 0.54 -0.0 103,664 - Rru_A0089 0.54 -0.2 103,664 - Rru_A0089 0.54 +0.0 103,664 - Rru_A0089 0.54 +1.0 103,664 - Rru_A0089 0.54 +0.5 103,666 + Rru_A0089 0.54 -2.3 103,667 - Rru_A0089 0.54 +0.2 103,723 + Rru_A0089 0.57 +0.4 103,723 + Rru_A0089 0.57 -0.6 103,724 - Rru_A0089 0.57 +0.5 103,724 - Rru_A0089 0.57 -0.6 103,724 - Rru_A0089 0.57 -2.3 103,724 - Rru_A0089 0.57 -2.5 103,724 - Rru_A0089 0.57 -0.6 103,910 + Rru_A0089 0.67 +0.0 103,910 + Rru_A0089 0.67 +0.0 103,910 + Rru_A0089 0.67 -0.8 103,910 + Rru_A0089 0.67 -0.9 103,910 + Rru_A0089 0.67 +0.2 103,910 + Rru_A0089 0.67 +0.0 103,910 + Rru_A0089 0.67 -0.3 103,911 - Rru_A0089 0.67 -0.3 103,911 - Rru_A0089 0.67 +0.3 103,911 - Rru_A0089 0.67 -0.2 103,911 - Rru_A0089 0.67 +2.0 103,911 - Rru_A0089 0.67 +1.2 103,911 - Rru_A0089 0.67 +0.1 104,016 + Rru_A0089 0.72 -0.9 104,017 - Rru_A0089 0.72 -0.4 104,064 + Rru_A0089 0.75 +0.4 104,395 + -2.5 104,395 + +0.4 104,395 + +0.0 104,706 + -0.9 104,706 + +0.4 104,707 - -0.5 104,707 - -0.1 104,751 + -0.1 104,751 + +0.8 104,752 - -1.9 104,752 - +1.0 104,752 - +0.4 104,752 - +0.2 105,066 + +0.6 105,066 + +1.8 105,066 + +0.1 105,067 - +0.9 105,067 - +1.0 105,067 - +0.1 105,067 - -0.2 105,067 - -0.0 105,067 - -1.6 105,279 + Rru_A0091 0.50 +0.4 105,280 - Rru_A0091 0.50 -1.0 105,280 - Rru_A0091 0.50 -0.1
Or see this region's nucleotide sequence