Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31945

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS31940 and RR42_RS31945 overlap by 4 nucleotidesRR42_RS31945 and RR42_RS31950 are separated by 8 nucleotidesRR42_RS31950 and RR42_RS31955 are separated by 26 nucleotides RR42_RS31940: RR42_RS31940 - 2-nitropropane dioxygenase, at 2,542,816 to 2,543,925 _RS31940 RR42_RS31945: RR42_RS31945 - enoyl-CoA hydratase, at 2,543,922 to 2,544,812 _RS31945 RR42_RS31950: RR42_RS31950 - ketoacid CoA transferase, at 2,544,821 to 2,545,624 _RS31950 RR42_RS31955: RR42_RS31955 - CoA-transferase, at 2,545,651 to 2,546,541 _RS31955 Position (kb) 2543 2544 2545Strain fitness (log2 ratio) -2 -1 0 1at 2543.060 kb on + strand, within RR42_RS31940at 2543.282 kb on + strand, within RR42_RS31940at 2543.698 kb on - strand, within RR42_RS31940at 2543.904 kb on + strandat 2543.904 kb on + strandat 2544.281 kb on - strand, within RR42_RS31945at 2544.470 kb on - strand, within RR42_RS31945at 2544.470 kb on - strand, within RR42_RS31945at 2544.491 kb on - strand, within RR42_RS31945at 2545.126 kb on - strand, within RR42_RS31950at 2545.126 kb on - strand, within RR42_RS31950at 2545.145 kb on - strand, within RR42_RS31950at 2545.145 kb on - strand, within RR42_RS31950at 2545.288 kb on + strand, within RR42_RS31950at 2545.449 kb on + strand, within RR42_RS31950at 2545.710 kb on - strandat 2545.710 kb on - strandat 2545.746 kb on - strand, within RR42_RS31955at 2545.784 kb on + strand, within RR42_RS31955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
2,543,060 + RR42_RS31940 0.22 -0.2
2,543,282 + RR42_RS31940 0.42 -1.7
2,543,698 - RR42_RS31940 0.79 +0.3
2,543,904 + +1.5
2,543,904 + +0.3
2,544,281 - RR42_RS31945 0.40 -1.5
2,544,470 - RR42_RS31945 0.62 +0.4
2,544,470 - RR42_RS31945 0.62 -0.1
2,544,491 - RR42_RS31945 0.64 -0.1
2,545,126 - RR42_RS31950 0.38 -1.9
2,545,126 - RR42_RS31950 0.38 -0.2
2,545,145 - RR42_RS31950 0.40 +1.1
2,545,145 - RR42_RS31950 0.40 -1.8
2,545,288 + RR42_RS31950 0.58 -0.2
2,545,449 + RR42_RS31950 0.78 -0.9
2,545,710 - -0.7
2,545,710 - -0.1
2,545,746 - RR42_RS31955 0.11 -0.2
2,545,784 + RR42_RS31955 0.15 +0.9

Or see this region's nucleotide sequence