Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26715

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26710 and RR42_RS26715 are separated by 20 nucleotidesRR42_RS26715 and RR42_RS26720 overlap by 97 nucleotidesRR42_RS26720 and RR42_RS26725 overlap by 44 nucleotidesRR42_RS26725 and RR42_RS26730 are separated by 7 nucleotides RR42_RS26710: RR42_RS26710 - alkanesulfonate monooxygenase, at 1,349,720 to 1,350,829 _RS26710 RR42_RS26715: RR42_RS26715 - sulfonate ABC transporter substrate-binding protein, at 1,350,850 to 1,351,818 _RS26715 RR42_RS26720: RR42_RS26720 - hypothetical protein, at 1,351,722 to 1,351,940 _RS26720 RR42_RS26725: RR42_RS26725 - diguanylate cyclase, at 1,351,897 to 1,352,634 _RS26725 RR42_RS26730: RR42_RS26730 - Fe-S oxidoreductase, at 1,352,642 to 1,353,031 _RS26730 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -1 0 1at 1349.903 kb on + strand, within RR42_RS26710at 1349.904 kb on - strand, within RR42_RS26710at 1349.904 kb on - strand, within RR42_RS26710at 1350.176 kb on + strand, within RR42_RS26710at 1350.176 kb on + strand, within RR42_RS26710at 1350.176 kb on + strand, within RR42_RS26710at 1350.176 kb on + strand, within RR42_RS26710at 1350.176 kb on + strand, within RR42_RS26710at 1350.177 kb on - strand, within RR42_RS26710at 1350.177 kb on - strand, within RR42_RS26710at 1350.177 kb on - strand, within RR42_RS26710at 1350.180 kb on - strand, within RR42_RS26710at 1350.296 kb on + strand, within RR42_RS26710at 1350.297 kb on - strand, within RR42_RS26710at 1350.297 kb on - strand, within RR42_RS26710at 1350.335 kb on - strand, within RR42_RS26710at 1350.668 kb on + strand, within RR42_RS26710at 1350.671 kb on + strand, within RR42_RS26710at 1350.672 kb on - strand, within RR42_RS26710at 1350.672 kb on - strand, within RR42_RS26710at 1350.672 kb on - strand, within RR42_RS26710at 1350.734 kb on + strandat 1351.018 kb on + strand, within RR42_RS26715at 1351.019 kb on - strand, within RR42_RS26715at 1351.019 kb on - strand, within RR42_RS26715at 1351.409 kb on - strand, within RR42_RS26715at 1351.483 kb on + strand, within RR42_RS26715at 1351.483 kb on + strand, within RR42_RS26715at 1351.484 kb on - strand, within RR42_RS26715at 1351.574 kb on - strand, within RR42_RS26715at 1351.723 kb on + strandat 1351.723 kb on + strandat 1351.723 kb on + strandat 1351.723 kb on + strandat 1351.970 kb on + strandat 1351.994 kb on + strand, within RR42_RS26725at 1352.249 kb on - strand, within RR42_RS26725at 1352.476 kb on + strand, within RR42_RS26725at 1352.647 kb on + strandat 1352.742 kb on + strand, within RR42_RS26730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,349,903 + RR42_RS26710 0.16 -0.1
1,349,904 - RR42_RS26710 0.17 +0.7
1,349,904 - RR42_RS26710 0.17 +0.1
1,350,176 + RR42_RS26710 0.41 -0.3
1,350,176 + RR42_RS26710 0.41 +0.5
1,350,176 + RR42_RS26710 0.41 +0.1
1,350,176 + RR42_RS26710 0.41 -0.2
1,350,176 + RR42_RS26710 0.41 +0.2
1,350,177 - RR42_RS26710 0.41 -0.9
1,350,177 - RR42_RS26710 0.41 -0.4
1,350,177 - RR42_RS26710 0.41 +0.6
1,350,180 - RR42_RS26710 0.41 -0.5
1,350,296 + RR42_RS26710 0.52 +0.8
1,350,297 - RR42_RS26710 0.52 -0.3
1,350,297 - RR42_RS26710 0.52 +0.5
1,350,335 - RR42_RS26710 0.55 +0.4
1,350,668 + RR42_RS26710 0.85 +0.0
1,350,671 + RR42_RS26710 0.86 +0.6
1,350,672 - RR42_RS26710 0.86 -0.7
1,350,672 - RR42_RS26710 0.86 +0.6
1,350,672 - RR42_RS26710 0.86 -0.3
1,350,734 + -1.1
1,351,018 + RR42_RS26715 0.17 -1.1
1,351,019 - RR42_RS26715 0.17 -1.3
1,351,019 - RR42_RS26715 0.17 +0.8
1,351,409 - RR42_RS26715 0.58 +0.1
1,351,483 + RR42_RS26715 0.65 -0.8
1,351,483 + RR42_RS26715 0.65 -0.9
1,351,484 - RR42_RS26715 0.65 -1.5
1,351,574 - RR42_RS26715 0.75 -1.5
1,351,723 + -0.7
1,351,723 + -1.1
1,351,723 + +0.8
1,351,723 + -0.8
1,351,970 + -0.7
1,351,994 + RR42_RS26725 0.13 -1.1
1,352,249 - RR42_RS26725 0.48 +0.5
1,352,476 + RR42_RS26725 0.78 +0.0
1,352,647 + -0.6
1,352,742 + RR42_RS26730 0.26 -0.5

Or see this region's nucleotide sequence