Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26640

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26635 and RR42_RS26640 are separated by 123 nucleotidesRR42_RS26640 and RR42_RS26645 are separated by 46 nucleotides RR42_RS26635: RR42_RS26635 - 2-hydroxyacid dehydrogenase, at 1,328,791 to 1,330,191 _RS26635 RR42_RS26640: RR42_RS26640 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 1,330,315 to 1,331,118 _RS26640 RR42_RS26645: RR42_RS26645 - succinate-semialdehyde dehydrogenase, at 1,331,165 to 1,332,649 _RS26645 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -1 0 1 2at 1329.419 kb on + strand, within RR42_RS26635at 1329.683 kb on + strand, within RR42_RS26635at 1330.000 kb on - strand, within RR42_RS26635at 1330.122 kb on - strandat 1330.122 kb on - strandat 1330.133 kb on + strandat 1330.319 kb on + strandat 1330.320 kb on - strandat 1330.320 kb on - strandat 1330.397 kb on + strand, within RR42_RS26640at 1330.397 kb on + strand, within RR42_RS26640at 1330.397 kb on + strand, within RR42_RS26640at 1330.602 kb on + strand, within RR42_RS26640at 1330.603 kb on - strand, within RR42_RS26640at 1330.798 kb on + strand, within RR42_RS26640at 1330.952 kb on - strand, within RR42_RS26640at 1331.188 kb on + strandat 1331.190 kb on + strandat 1331.191 kb on - strandat 1331.205 kb on + strandat 1331.205 kb on + strandat 1331.205 kb on + strandat 1331.370 kb on + strand, within RR42_RS26645at 1331.517 kb on + strand, within RR42_RS26645at 1331.517 kb on + strand, within RR42_RS26645at 1331.518 kb on - strand, within RR42_RS26645at 1331.521 kb on - strand, within RR42_RS26645at 1331.715 kb on + strand, within RR42_RS26645at 1331.716 kb on - strand, within RR42_RS26645at 1331.736 kb on - strand, within RR42_RS26645at 1331.739 kb on + strand, within RR42_RS26645at 1332.021 kb on - strand, within RR42_RS26645at 1332.021 kb on - strand, within RR42_RS26645at 1332.054 kb on + strand, within RR42_RS26645at 1332.054 kb on + strand, within RR42_RS26645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
1,329,419 + RR42_RS26635 0.45 -1.0
1,329,683 + RR42_RS26635 0.64 -0.0
1,330,000 - RR42_RS26635 0.86 -0.6
1,330,122 - -0.2
1,330,122 - -0.1
1,330,133 + -0.6
1,330,319 + -0.3
1,330,320 - +0.8
1,330,320 - +0.2
1,330,397 + RR42_RS26640 0.10 -0.0
1,330,397 + RR42_RS26640 0.10 +1.3
1,330,397 + RR42_RS26640 0.10 +1.9
1,330,602 + RR42_RS26640 0.36 -1.1
1,330,603 - RR42_RS26640 0.36 +0.1
1,330,798 + RR42_RS26640 0.60 +1.1
1,330,952 - RR42_RS26640 0.79 +1.2
1,331,188 + -0.0
1,331,190 + +0.5
1,331,191 - -1.0
1,331,205 + -0.0
1,331,205 + -0.4
1,331,205 + -0.9
1,331,370 + RR42_RS26645 0.14 -0.2
1,331,517 + RR42_RS26645 0.24 +0.5
1,331,517 + RR42_RS26645 0.24 -0.3
1,331,518 - RR42_RS26645 0.24 +0.4
1,331,521 - RR42_RS26645 0.24 -0.6
1,331,715 + RR42_RS26645 0.37 +0.7
1,331,716 - RR42_RS26645 0.37 +1.4
1,331,736 - RR42_RS26645 0.38 -0.6
1,331,739 + RR42_RS26645 0.39 -0.1
1,332,021 - RR42_RS26645 0.58 -0.0
1,332,021 - RR42_RS26645 0.58 +0.2
1,332,054 + RR42_RS26645 0.60 -0.9
1,332,054 + RR42_RS26645 0.60 -1.0

Or see this region's nucleotide sequence