Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25665 and RR42_RS25670 are separated by 141 nucleotides RR42_RS25670 and RR42_RS25675 are separated by 16 nucleotides RR42_RS25675 and RR42_RS25680 are separated by 128 nucleotides
RR42_RS25665: RR42_RS25665 - ABC transporter permease, at 1,102,915 to 1,104,171
_RS25665
RR42_RS25670: RR42_RS25670 - hypothetical protein, at 1,104,313 to 1,104,633
_RS25670
RR42_RS25675: RR42_RS25675 - hypothetical protein, at 1,104,650 to 1,105,009
_RS25675
RR42_RS25680: RR42_RS25680 - hypothetical protein, at 1,105,138 to 1,105,764
_RS25680
Position (kb) 1104
1105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1103.442 kb on + strand, within RR42_RS25665 at 1103.443 kb on - strand, within RR42_RS25665 at 1103.571 kb on - strand, within RR42_RS25665 at 1103.571 kb on - strand, within RR42_RS25665 at 1103.688 kb on + strand, within RR42_RS25665 at 1103.689 kb on - strand, within RR42_RS25665 at 1103.690 kb on + strand, within RR42_RS25665 at 1103.933 kb on - strand, within RR42_RS25665 at 1104.014 kb on + strand, within RR42_RS25665 at 1104.015 kb on - strand, within RR42_RS25665 at 1104.015 kb on - strand, within RR42_RS25665 at 1104.015 kb on - strand, within RR42_RS25665 at 1104.015 kb on - strand, within RR42_RS25665 at 1104.165 kb on + strand at 1104.188 kb on - strand at 1104.253 kb on + strand at 1104.253 kb on + strand at 1104.253 kb on + strand at 1104.254 kb on - strand at 1104.420 kb on - strand, within RR42_RS25670 at 1104.522 kb on + strand, within RR42_RS25670 at 1104.522 kb on + strand, within RR42_RS25670 at 1104.522 kb on + strand, within RR42_RS25670 at 1104.590 kb on + strand, within RR42_RS25670 at 1104.595 kb on + strand, within RR42_RS25670 at 1104.596 kb on - strand, within RR42_RS25670 at 1104.732 kb on + strand, within RR42_RS25675 at 1104.772 kb on + strand, within RR42_RS25675 at 1104.772 kb on + strand, within RR42_RS25675 at 1104.859 kb on + strand, within RR42_RS25675 at 1104.859 kb on + strand, within RR42_RS25675 at 1104.860 kb on - strand, within RR42_RS25675 at 1104.860 kb on - strand, within RR42_RS25675 at 1104.927 kb on - strand, within RR42_RS25675 at 1104.993 kb on - strand at 1105.252 kb on - strand, within RR42_RS25680 at 1105.252 kb on - strand, within RR42_RS25680 at 1105.312 kb on - strand, within RR42_RS25680 at 1105.382 kb on + strand, within RR42_RS25680 at 1105.383 kb on - strand, within RR42_RS25680 at 1105.395 kb on + strand, within RR42_RS25680 at 1105.395 kb on + strand, within RR42_RS25680 at 1105.396 kb on - strand, within RR42_RS25680 at 1105.424 kb on + strand, within RR42_RS25680 at 1105.425 kb on - strand, within RR42_RS25680 at 1105.427 kb on + strand, within RR42_RS25680 at 1105.427 kb on + strand, within RR42_RS25680 at 1105.428 kb on - strand, within RR42_RS25680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,103,442 + RR42_RS25665 0.42 +0.4 1,103,443 - RR42_RS25665 0.42 -0.7 1,103,571 - RR42_RS25665 0.52 +0.3 1,103,571 - RR42_RS25665 0.52 -0.4 1,103,688 + RR42_RS25665 0.61 -0.7 1,103,689 - RR42_RS25665 0.62 +1.6 1,103,690 + RR42_RS25665 0.62 +0.6 1,103,933 - RR42_RS25665 0.81 +0.6 1,104,014 + RR42_RS25665 0.87 -0.4 1,104,015 - RR42_RS25665 0.88 -1.4 1,104,015 - RR42_RS25665 0.88 +0.3 1,104,015 - RR42_RS25665 0.88 -0.1 1,104,015 - RR42_RS25665 0.88 +1.3 1,104,165 + -0.6 1,104,188 - +1.0 1,104,253 + +0.5 1,104,253 + +0.0 1,104,253 + -2.6 1,104,254 - +0.1 1,104,420 - RR42_RS25670 0.33 +0.7 1,104,522 + RR42_RS25670 0.65 +0.3 1,104,522 + RR42_RS25670 0.65 +1.3 1,104,522 + RR42_RS25670 0.65 +0.1 1,104,590 + RR42_RS25670 0.86 -0.1 1,104,595 + RR42_RS25670 0.88 +0.3 1,104,596 - RR42_RS25670 0.88 +0.9 1,104,732 + RR42_RS25675 0.23 +2.2 1,104,772 + RR42_RS25675 0.34 +0.5 1,104,772 + RR42_RS25675 0.34 -0.4 1,104,859 + RR42_RS25675 0.58 +0.0 1,104,859 + RR42_RS25675 0.58 -1.1 1,104,860 - RR42_RS25675 0.58 -2.0 1,104,860 - RR42_RS25675 0.58 -0.1 1,104,927 - RR42_RS25675 0.77 -0.7 1,104,993 - +0.3 1,105,252 - RR42_RS25680 0.18 -0.1 1,105,252 - RR42_RS25680 0.18 -0.6 1,105,312 - RR42_RS25680 0.28 -0.3 1,105,382 + RR42_RS25680 0.39 -0.4 1,105,383 - RR42_RS25680 0.39 -0.3 1,105,395 + RR42_RS25680 0.41 +0.2 1,105,395 + RR42_RS25680 0.41 -0.3 1,105,396 - RR42_RS25680 0.41 +0.5 1,105,424 + RR42_RS25680 0.46 +0.3 1,105,425 - RR42_RS25680 0.46 +1.0 1,105,427 + RR42_RS25680 0.46 +0.9 1,105,427 + RR42_RS25680 0.46 +0.1 1,105,428 - RR42_RS25680 0.46 -2.5
Or see this region's nucleotide sequence