Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22775

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22770 and RR42_RS22775 are separated by 2 nucleotidesRR42_RS22775 and RR42_RS22780 are separated by 20 nucleotidesRR42_RS22780 and RR42_RS22785 are separated by 160 nucleotides RR42_RS22770: RR42_RS22770 - 3-isopropylmalate dehydratase, at 441,141 to 442,541 _RS22770 RR42_RS22775: RR42_RS22775 - 3-isopropylmalate dehydratase, at 442,544 to 443,170 _RS22775 RR42_RS22780: RR42_RS22780 - hypothetical protein, at 443,191 to 443,745 _RS22780 RR42_RS22785: RR42_RS22785 - receptor, at 443,906 to 444,859 _RS22785 Position (kb) 442 443 444Strain fitness (log2 ratio) -2 -1 0 1at 441.588 kb on - strand, within RR42_RS22770at 441.588 kb on - strand, within RR42_RS22770at 441.698 kb on + strand, within RR42_RS22770at 441.699 kb on - strand, within RR42_RS22770at 441.882 kb on + strand, within RR42_RS22770at 442.113 kb on + strand, within RR42_RS22770at 442.113 kb on + strand, within RR42_RS22770at 442.114 kb on - strand, within RR42_RS22770at 442.114 kb on - strand, within RR42_RS22770at 442.114 kb on - strand, within RR42_RS22770at 442.114 kb on - strand, within RR42_RS22770at 442.525 kb on + strandat 442.556 kb on - strandat 442.850 kb on + strand, within RR42_RS22775at 442.851 kb on - strand, within RR42_RS22775at 442.851 kb on - strand, within RR42_RS22775at 442.866 kb on - strand, within RR42_RS22775at 442.866 kb on - strand, within RR42_RS22775at 442.866 kb on - strand, within RR42_RS22775at 443.828 kb on - strandat 443.840 kb on + strandat 444.008 kb on + strand, within RR42_RS22785at 444.011 kb on - strand, within RR42_RS22785at 444.026 kb on - strand, within RR42_RS22785at 444.160 kb on + strand, within RR42_RS22785at 444.160 kb on + strand, within RR42_RS22785at 444.161 kb on - strand, within RR42_RS22785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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441,588 - RR42_RS22770 0.32 -0.3
441,588 - RR42_RS22770 0.32 -0.1
441,698 + RR42_RS22770 0.40 +0.5
441,699 - RR42_RS22770 0.40 -2.1
441,882 + RR42_RS22770 0.53 +0.1
442,113 + RR42_RS22770 0.69 -0.5
442,113 + RR42_RS22770 0.69 -0.6
442,114 - RR42_RS22770 0.69 +1.2
442,114 - RR42_RS22770 0.69 +0.9
442,114 - RR42_RS22770 0.69 +1.3
442,114 - RR42_RS22770 0.69 +1.0
442,525 + +1.1
442,556 - -0.4
442,850 + RR42_RS22775 0.49 -0.1
442,851 - RR42_RS22775 0.49 +0.5
442,851 - RR42_RS22775 0.49 -0.4
442,866 - RR42_RS22775 0.51 +0.4
442,866 - RR42_RS22775 0.51 -0.1
442,866 - RR42_RS22775 0.51 +0.3
443,828 - +0.5
443,840 + -2.5
444,008 + RR42_RS22785 0.11 -0.0
444,011 - RR42_RS22785 0.11 -0.3
444,026 - RR42_RS22785 0.13 +0.7
444,160 + RR42_RS22785 0.27 -0.9
444,160 + RR42_RS22785 0.27 +0.1
444,161 - RR42_RS22785 0.27 +0.9

Or see this region's nucleotide sequence