Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22175 and RR42_RS22180 are separated by 883 nucleotides RR42_RS22180 and RR42_RS22185 are separated by 159 nucleotides
RR42_RS22175: RR42_RS22175 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 312,010 to 312,876
_RS22175
RR42_RS22180: RR42_RS22180 - hypothetical protein, at 313,760 to 314,458
_RS22180
RR42_RS22185: RR42_RS22185 - LysR family transcriptional regulator, at 314,618 to 315,583
_RS22185
Position (kb) 313
314
315 Strain fitness (log2 ratio) -1
0
1 at 312.761 kb on + strand, within RR42_RS22175 at 312.761 kb on + strand, within RR42_RS22175 at 312.762 kb on - strand, within RR42_RS22175 at 313.014 kb on + strand at 313.014 kb on + strand at 313.015 kb on - strand at 313.216 kb on + strand at 313.216 kb on + strand at 313.216 kb on + strand at 313.216 kb on + strand at 313.217 kb on - strand at 313.217 kb on - strand at 313.220 kb on + strand at 313.221 kb on - strand at 313.322 kb on - strand at 313.370 kb on + strand at 313.371 kb on - strand at 313.428 kb on + strand at 313.428 kb on + strand at 313.429 kb on - strand at 313.429 kb on - strand at 313.429 kb on - strand at 313.429 kb on - strand at 313.569 kb on - strand at 313.581 kb on + strand at 313.703 kb on + strand at 313.703 kb on + strand at 313.704 kb on - strand at 313.704 kb on - strand at 313.921 kb on + strand, within RR42_RS22180 at 314.363 kb on - strand, within RR42_RS22180 at 314.465 kb on + strand at 314.472 kb on - strand at 314.550 kb on + strand at 314.550 kb on + strand at 314.550 kb on + strand at 314.550 kb on + strand at 314.550 kb on + strand at 314.550 kb on + strand at 314.551 kb on - strand at 314.551 kb on - strand at 314.551 kb on - strand at 314.551 kb on - strand at 314.551 kb on - strand at 314.576 kb on + strand at 314.576 kb on + strand at 314.577 kb on - strand at 314.693 kb on - strand at 314.764 kb on - strand, within RR42_RS22185 at 314.764 kb on - strand, within RR42_RS22185 at 314.764 kb on - strand, within RR42_RS22185 at 315.152 kb on + strand, within RR42_RS22185 at 315.364 kb on + strand, within RR42_RS22185
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 312,761 + RR42_RS22175 0.87 -0.1 312,761 + RR42_RS22175 0.87 -1.3 312,762 - RR42_RS22175 0.87 -1.0 313,014 + -0.1 313,014 + -0.3 313,015 - +0.2 313,216 + -1.1 313,216 + +0.4 313,216 + -0.3 313,216 + +0.6 313,217 - +0.4 313,217 - +0.9 313,220 + +0.5 313,221 - -1.3 313,322 - +0.9 313,370 + -0.6 313,371 - -0.5 313,428 + -0.3 313,428 + -0.1 313,429 - -0.3 313,429 - -0.9 313,429 - +0.3 313,429 - +0.4 313,569 - +0.5 313,581 + -0.3 313,703 + -0.2 313,703 + -0.3 313,704 - +0.6 313,704 - -0.6 313,921 + RR42_RS22180 0.23 +0.7 314,363 - RR42_RS22180 0.86 +0.0 314,465 + +0.1 314,472 - +1.4 314,550 + +0.9 314,550 + +0.2 314,550 + -0.2 314,550 + -0.3 314,550 + -1.3 314,550 + -0.9 314,551 - +1.0 314,551 - +1.1 314,551 - +0.1 314,551 - -0.1 314,551 - -0.3 314,576 + +0.7 314,576 + +0.5 314,577 - -0.9 314,693 - +0.3 314,764 - RR42_RS22185 0.15 +0.6 314,764 - RR42_RS22185 0.15 +1.6 314,764 - RR42_RS22185 0.15 +0.0 315,152 + RR42_RS22185 0.55 -1.1 315,364 + RR42_RS22185 0.77 +0.2
Or see this region's nucleotide sequence