Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21205

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21200 and RR42_RS21205 are separated by 357 nucleotidesRR42_RS21205 and RR42_RS21210 are separated by 856 nucleotides RR42_RS21200: RR42_RS21200 - membrane protein, at 79,901 to 80,545 _RS21200 RR42_RS21205: RR42_RS21205 - 2-isopropylmalate synthase, at 80,903 to 82,600 _RS21205 RR42_RS21210: RR42_RS21210 - hypothetical protein, at 83,457 to 84,767 _RS21210 Position (kb) 80 81 82 83Strain fitness (log2 ratio) -1 0 1 2 3at 80.043 kb on + strand, within RR42_RS21200at 80.044 kb on - strand, within RR42_RS21200at 80.084 kb on - strand, within RR42_RS21200at 80.154 kb on + strand, within RR42_RS21200at 80.154 kb on + strand, within RR42_RS21200at 80.155 kb on - strand, within RR42_RS21200at 80.155 kb on - strand, within RR42_RS21200at 80.155 kb on - strand, within RR42_RS21200at 80.188 kb on - strand, within RR42_RS21200at 80.247 kb on + strand, within RR42_RS21200at 80.311 kb on - strand, within RR42_RS21200at 80.410 kb on - strand, within RR42_RS21200at 80.529 kb on + strandat 80.530 kb on - strandat 80.530 kb on - strandat 80.727 kb on - strandat 80.742 kb on + strandat 81.057 kb on + strandat 81.057 kb on + strandat 81.057 kb on + strandat 81.058 kb on - strandat 81.106 kb on - strand, within RR42_RS21205at 81.272 kb on - strand, within RR42_RS21205at 81.273 kb on + strand, within RR42_RS21205at 81.273 kb on + strand, within RR42_RS21205at 81.274 kb on - strand, within RR42_RS21205at 81.274 kb on - strand, within RR42_RS21205at 81.321 kb on + strand, within RR42_RS21205at 81.321 kb on + strand, within RR42_RS21205at 81.321 kb on + strand, within RR42_RS21205at 81.322 kb on - strand, within RR42_RS21205at 81.409 kb on + strand, within RR42_RS21205at 81.410 kb on - strand, within RR42_RS21205at 81.410 kb on - strand, within RR42_RS21205at 81.411 kb on + strand, within RR42_RS21205at 81.411 kb on + strand, within RR42_RS21205at 81.411 kb on + strand, within RR42_RS21205at 81.412 kb on - strand, within RR42_RS21205at 81.412 kb on - strand, within RR42_RS21205at 81.438 kb on + strand, within RR42_RS21205at 81.438 kb on + strand, within RR42_RS21205at 81.470 kb on + strand, within RR42_RS21205at 81.489 kb on + strand, within RR42_RS21205at 81.525 kb on + strand, within RR42_RS21205at 81.526 kb on - strand, within RR42_RS21205at 81.627 kb on + strand, within RR42_RS21205at 81.627 kb on + strand, within RR42_RS21205at 81.627 kb on + strand, within RR42_RS21205at 81.627 kb on + strand, within RR42_RS21205at 81.628 kb on - strand, within RR42_RS21205at 81.628 kb on - strand, within RR42_RS21205at 81.729 kb on + strand, within RR42_RS21205at 81.881 kb on + strand, within RR42_RS21205at 81.882 kb on - strand, within RR42_RS21205at 81.882 kb on - strand, within RR42_RS21205at 81.882 kb on - strand, within RR42_RS21205at 81.882 kb on - strand, within RR42_RS21205at 81.940 kb on + strand, within RR42_RS21205at 81.940 kb on + strand, within RR42_RS21205at 82.081 kb on - strand, within RR42_RS21205at 82.086 kb on + strand, within RR42_RS21205at 82.086 kb on + strand, within RR42_RS21205at 82.087 kb on - strand, within RR42_RS21205at 82.218 kb on + strand, within RR42_RS21205at 82.218 kb on + strand, within RR42_RS21205at 82.218 kb on + strand, within RR42_RS21205at 82.218 kb on + strand, within RR42_RS21205at 82.218 kb on + strand, within RR42_RS21205at 82.218 kb on + strand, within RR42_RS21205at 82.219 kb on - strand, within RR42_RS21205at 82.219 kb on - strand, within RR42_RS21205at 82.219 kb on - strand, within RR42_RS21205at 82.219 kb on - strand, within RR42_RS21205at 82.271 kb on + strand, within RR42_RS21205at 82.553 kb on - strandat 82.553 kb on - strandat 82.556 kb on + strandat 82.556 kb on + strandat 82.556 kb on + strandat 82.557 kb on - strandat 82.557 kb on - strandat 82.557 kb on - strandat 82.557 kb on - strandat 82.764 kb on + strandat 82.764 kb on + strandat 82.765 kb on - strandat 82.765 kb on - strandat 82.772 kb on - strandat 82.791 kb on + strandat 82.792 kb on - strandat 82.797 kb on + strandat 82.797 kb on + strandat 82.798 kb on - strandat 82.798 kb on - strandat 83.009 kb on - strandat 83.017 kb on + strandat 83.017 kb on + strandat 83.017 kb on + strandat 83.018 kb on - strandat 83.018 kb on - strandat 83.040 kb on + strandat 83.041 kb on - strandat 83.041 kb on - strandat 83.041 kb on - strandat 83.092 kb on + strandat 83.093 kb on - strandat 83.217 kb on + strandat 83.217 kb on + strandat 83.218 kb on - strandat 83.218 kb on - strandat 83.218 kb on - strandat 83.218 kb on - strandat 83.218 kb on - strandat 83.221 kb on + strandat 83.221 kb on + strandat 83.221 kb on + strandat 83.221 kb on + strandat 83.222 kb on - strandat 83.222 kb on - strandat 83.222 kb on - strandat 83.222 kb on - strandat 83.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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80,043 + RR42_RS21200 0.22 +0.3
80,044 - RR42_RS21200 0.22 +0.1
80,084 - RR42_RS21200 0.28 +0.7
80,154 + RR42_RS21200 0.39 -0.5
80,154 + RR42_RS21200 0.39 -0.2
80,155 - RR42_RS21200 0.39 +0.1
80,155 - RR42_RS21200 0.39 +0.2
80,155 - RR42_RS21200 0.39 -0.6
80,188 - RR42_RS21200 0.44 -1.7
80,247 + RR42_RS21200 0.54 -0.3
80,311 - RR42_RS21200 0.64 +0.6
80,410 - RR42_RS21200 0.79 -0.3
80,529 + +0.3
80,530 - -0.8
80,530 - +0.5
80,727 - +0.2
80,742 + -0.2
81,057 + -0.1
81,057 + +0.3
81,057 + +1.0
81,058 - +3.1
81,106 - RR42_RS21205 0.12 +1.0
81,272 - RR42_RS21205 0.22 -1.6
81,273 + RR42_RS21205 0.22 -0.0
81,273 + RR42_RS21205 0.22 +2.5
81,274 - RR42_RS21205 0.22 -0.2
81,274 - RR42_RS21205 0.22 -0.1
81,321 + RR42_RS21205 0.25 +1.7
81,321 + RR42_RS21205 0.25 -0.2
81,321 + RR42_RS21205 0.25 -0.1
81,322 - RR42_RS21205 0.25 +0.8
81,409 + RR42_RS21205 0.30 +1.5
81,410 - RR42_RS21205 0.30 +1.5
81,410 - RR42_RS21205 0.30 -0.7
81,411 + RR42_RS21205 0.30 +0.7
81,411 + RR42_RS21205 0.30 -0.1
81,411 + RR42_RS21205 0.30 +0.2
81,412 - RR42_RS21205 0.30 -0.3
81,412 - RR42_RS21205 0.30 +0.6
81,438 + RR42_RS21205 0.32 -0.6
81,438 + RR42_RS21205 0.32 -0.1
81,470 + RR42_RS21205 0.33 -1.0
81,489 + RR42_RS21205 0.35 +0.7
81,525 + RR42_RS21205 0.37 +0.2
81,526 - RR42_RS21205 0.37 -1.1
81,627 + RR42_RS21205 0.43 -0.4
81,627 + RR42_RS21205 0.43 -0.1
81,627 + RR42_RS21205 0.43 -0.7
81,627 + RR42_RS21205 0.43 -0.4
81,628 - RR42_RS21205 0.43 -0.3
81,628 - RR42_RS21205 0.43 -0.7
81,729 + RR42_RS21205 0.49 +1.1
81,881 + RR42_RS21205 0.58 +0.3
81,882 - RR42_RS21205 0.58 +0.1
81,882 - RR42_RS21205 0.58 -0.5
81,882 - RR42_RS21205 0.58 +0.5
81,882 - RR42_RS21205 0.58 -0.1
81,940 + RR42_RS21205 0.61 +1.5
81,940 + RR42_RS21205 0.61 -0.6
82,081 - RR42_RS21205 0.69 -0.3
82,086 + RR42_RS21205 0.70 -0.2
82,086 + RR42_RS21205 0.70 -0.0
82,087 - RR42_RS21205 0.70 +0.2
82,218 + RR42_RS21205 0.77 +0.6
82,218 + RR42_RS21205 0.77 -0.1
82,218 + RR42_RS21205 0.77 -0.3
82,218 + RR42_RS21205 0.77 -0.6
82,218 + RR42_RS21205 0.77 -0.4
82,218 + RR42_RS21205 0.77 -0.4
82,219 - RR42_RS21205 0.78 -0.9
82,219 - RR42_RS21205 0.78 +0.3
82,219 - RR42_RS21205 0.78 -0.2
82,219 - RR42_RS21205 0.78 +0.6
82,271 + RR42_RS21205 0.81 +1.1
82,553 - -1.0
82,553 - -0.4
82,556 + -0.1
82,556 + +0.1
82,556 + +0.7
82,557 - +0.3
82,557 - -1.3
82,557 - -0.8
82,557 - -0.1
82,764 + -0.1
82,764 + -0.7
82,765 - +0.5
82,765 - +0.1
82,772 - -0.6
82,791 + +0.7
82,792 - -1.4
82,797 + -1.0
82,797 + +2.9
82,798 - +0.4
82,798 - -0.4
83,009 - +0.1
83,017 + +0.4
83,017 + +0.3
83,017 + -0.4
83,018 - +0.2
83,018 - +0.8
83,040 + -0.1
83,041 - -0.3
83,041 - +0.6
83,041 - +0.0
83,092 + -1.3
83,093 - -0.4
83,217 + -0.3
83,217 + -0.4
83,218 - -0.4
83,218 - +0.4
83,218 - +0.5
83,218 - -0.4
83,218 - +0.7
83,221 + +1.9
83,221 + -0.3
83,221 + +0.1
83,221 + -0.3
83,222 - +0.5
83,222 - -0.0
83,222 - -0.2
83,222 - -0.0
83,252 - -0.2

Or see this region's nucleotide sequence