Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21085

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21075 and RR42_RS21080 are separated by 40 nucleotidesRR42_RS21080 and RR42_RS21085 overlap by 4 nucleotidesRR42_RS21085 and RR42_RS21090 overlap by 4 nucleotides RR42_RS21075: RR42_RS21075 - phosphoribosyltransferase, at 54,061 to 54,768 _RS21075 RR42_RS21080: RR42_RS21080 - 3-isopropylmalate dehydratase, at 54,809 to 55,321 _RS21080 RR42_RS21085: RR42_RS21085 - 3-isopropylmalate dehydratase, at 55,318 to 56,625 _RS21085 RR42_RS21090: RR42_RS21090 - MFS transporter, at 56,622 to 57,650 _RS21090 Position (kb) 55 56 57Strain fitness (log2 ratio) -1 0 1 2at 54.691 kb on + strand, within RR42_RS21075at 55.126 kb on + strand, within RR42_RS21080at 55.228 kb on + strand, within RR42_RS21080at 55.229 kb on - strand, within RR42_RS21080at 55.229 kb on - strand, within RR42_RS21080at 55.229 kb on - strand, within RR42_RS21080at 55.229 kb on - strand, within RR42_RS21080at 55.606 kb on + strand, within RR42_RS21085at 55.606 kb on + strand, within RR42_RS21085at 55.606 kb on + strand, within RR42_RS21085at 55.606 kb on + strand, within RR42_RS21085at 55.607 kb on - strand, within RR42_RS21085at 55.607 kb on - strand, within RR42_RS21085at 55.607 kb on - strand, within RR42_RS21085at 55.697 kb on + strand, within RR42_RS21085at 55.697 kb on + strand, within RR42_RS21085at 56.012 kb on + strand, within RR42_RS21085at 56.012 kb on + strand, within RR42_RS21085at 56.012 kb on + strand, within RR42_RS21085at 56.013 kb on - strand, within RR42_RS21085at 56.027 kb on + strand, within RR42_RS21085at 56.028 kb on - strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.127 kb on + strand, within RR42_RS21085at 56.128 kb on - strand, within RR42_RS21085at 56.199 kb on + strand, within RR42_RS21085at 56.199 kb on + strand, within RR42_RS21085at 56.199 kb on + strand, within RR42_RS21085at 56.200 kb on - strand, within RR42_RS21085at 56.200 kb on - strand, within RR42_RS21085at 56.201 kb on + strand, within RR42_RS21085at 56.201 kb on + strand, within RR42_RS21085at 56.202 kb on - strand, within RR42_RS21085at 56.202 kb on - strand, within RR42_RS21085at 56.287 kb on + strand, within RR42_RS21085at 56.287 kb on + strand, within RR42_RS21085at 56.288 kb on - strand, within RR42_RS21085at 56.399 kb on + strand, within RR42_RS21085at 56.399 kb on + strand, within RR42_RS21085at 56.400 kb on - strand, within RR42_RS21085at 56.400 kb on - strand, within RR42_RS21085at 56.400 kb on - strand, within RR42_RS21085at 56.420 kb on + strand, within RR42_RS21085at 56.420 kb on + strand, within RR42_RS21085at 56.421 kb on - strand, within RR42_RS21085at 56.421 kb on - strand, within RR42_RS21085at 56.645 kb on - strandat 56.975 kb on + strand, within RR42_RS21090at 57.040 kb on + strand, within RR42_RS21090at 57.040 kb on + strand, within RR42_RS21090at 57.040 kb on + strand, within RR42_RS21090at 57.040 kb on + strand, within RR42_RS21090at 57.041 kb on - strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.058 kb on + strand, within RR42_RS21090at 57.059 kb on - strand, within RR42_RS21090at 57.059 kb on - strand, within RR42_RS21090at 57.280 kb on + strand, within RR42_RS21090at 57.280 kb on + strand, within RR42_RS21090at 57.280 kb on + strand, within RR42_RS21090at 57.280 kb on + strand, within RR42_RS21090at 57.281 kb on - strand, within RR42_RS21090at 57.326 kb on + strand, within RR42_RS21090at 57.326 kb on + strand, within RR42_RS21090at 57.327 kb on - strand, within RR42_RS21090at 57.327 kb on - strand, within RR42_RS21090

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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54,691 + RR42_RS21075 0.89 +0.3
55,126 + RR42_RS21080 0.62 -0.2
55,228 + RR42_RS21080 0.82 +0.7
55,229 - RR42_RS21080 0.82 -1.5
55,229 - RR42_RS21080 0.82 -0.3
55,229 - RR42_RS21080 0.82 +1.5
55,229 - RR42_RS21080 0.82 +0.1
55,606 + RR42_RS21085 0.22 -0.1
55,606 + RR42_RS21085 0.22 -0.7
55,606 + RR42_RS21085 0.22 +0.4
55,606 + RR42_RS21085 0.22 -1.2
55,607 - RR42_RS21085 0.22 -0.4
55,607 - RR42_RS21085 0.22 -0.1
55,607 - RR42_RS21085 0.22 +2.0
55,697 + RR42_RS21085 0.29 -0.4
55,697 + RR42_RS21085 0.29 -0.4
56,012 + RR42_RS21085 0.53 +2.4
56,012 + RR42_RS21085 0.53 -0.3
56,012 + RR42_RS21085 0.53 +0.9
56,013 - RR42_RS21085 0.53 +0.3
56,027 + RR42_RS21085 0.54 +0.4
56,028 - RR42_RS21085 0.54 +0.9
56,127 + RR42_RS21085 0.62 +0.7
56,127 + RR42_RS21085 0.62 -0.4
56,127 + RR42_RS21085 0.62 -0.6
56,127 + RR42_RS21085 0.62 +0.4
56,127 + RR42_RS21085 0.62 +0.7
56,127 + RR42_RS21085 0.62 +1.2
56,127 + RR42_RS21085 0.62 +0.1
56,128 - RR42_RS21085 0.62 -0.2
56,199 + RR42_RS21085 0.67 -1.0
56,199 + RR42_RS21085 0.67 +0.5
56,199 + RR42_RS21085 0.67 -0.1
56,200 - RR42_RS21085 0.67 -0.1
56,200 - RR42_RS21085 0.67 +0.5
56,201 + RR42_RS21085 0.68 -0.6
56,201 + RR42_RS21085 0.68 -0.5
56,202 - RR42_RS21085 0.68 -0.2
56,202 - RR42_RS21085 0.68 -1.0
56,287 + RR42_RS21085 0.74 +0.1
56,287 + RR42_RS21085 0.74 +0.4
56,288 - RR42_RS21085 0.74 -0.3
56,399 + RR42_RS21085 0.83 +0.5
56,399 + RR42_RS21085 0.83 +0.2
56,400 - RR42_RS21085 0.83 +0.1
56,400 - RR42_RS21085 0.83 +0.5
56,400 - RR42_RS21085 0.83 +0.2
56,420 + RR42_RS21085 0.84 -0.1
56,420 + RR42_RS21085 0.84 +0.8
56,421 - RR42_RS21085 0.84 +0.1
56,421 - RR42_RS21085 0.84 -1.1
56,645 - -0.4
56,975 + RR42_RS21090 0.34 +0.4
57,040 + RR42_RS21090 0.41 +0.6
57,040 + RR42_RS21090 0.41 +1.9
57,040 + RR42_RS21090 0.41 +0.0
57,040 + RR42_RS21090 0.41 -0.3
57,041 - RR42_RS21090 0.41 +0.5
57,058 + RR42_RS21090 0.42 +0.1
57,058 + RR42_RS21090 0.42 +0.2
57,058 + RR42_RS21090 0.42 -1.1
57,058 + RR42_RS21090 0.42 +0.8
57,058 + RR42_RS21090 0.42 +0.2
57,058 + RR42_RS21090 0.42 +0.5
57,058 + RR42_RS21090 0.42 -0.3
57,059 - RR42_RS21090 0.42 -0.8
57,059 - RR42_RS21090 0.42 -0.3
57,280 + RR42_RS21090 0.64 +0.5
57,280 + RR42_RS21090 0.64 +0.2
57,280 + RR42_RS21090 0.64 +0.0
57,280 + RR42_RS21090 0.64 +0.3
57,281 - RR42_RS21090 0.64 +0.6
57,326 + RR42_RS21090 0.68 -0.5
57,326 + RR42_RS21090 0.68 +0.5
57,327 - RR42_RS21090 0.69 -0.2
57,327 - RR42_RS21090 0.69 +0.7

Or see this region's nucleotide sequence