Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19410 and RR42_RS19415 are separated by 307 nucleotides RR42_RS19415 and RR42_RS19420 are separated by 514 nucleotides
RR42_RS19410: RR42_RS19410 - GntR family transcriptional regulator, at 4,192,599 to 4,193,315
_RS19410
RR42_RS19415: RR42_RS19415 - membrane protein, at 4,193,623 to 4,194,870
_RS19415
RR42_RS19420: RR42_RS19420 - hypothetical protein, at 4,195,385 to 4,197,472
_RS19420
Position (kb) 4193
4194
4195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4192.652 kb on + strand at 4192.654 kb on + strand at 4192.654 kb on + strand at 4192.654 kb on + strand at 4192.655 kb on - strand at 4192.799 kb on + strand, within RR42_RS19410 at 4192.799 kb on + strand, within RR42_RS19410 at 4192.799 kb on + strand, within RR42_RS19410 at 4192.800 kb on - strand, within RR42_RS19410 at 4192.809 kb on - strand, within RR42_RS19410 at 4192.824 kb on - strand, within RR42_RS19410 at 4192.835 kb on + strand, within RR42_RS19410 at 4192.836 kb on - strand, within RR42_RS19410 at 4193.148 kb on + strand, within RR42_RS19410 at 4193.148 kb on + strand, within RR42_RS19410 at 4193.149 kb on - strand, within RR42_RS19410 at 4193.149 kb on - strand, within RR42_RS19410 at 4193.182 kb on + strand, within RR42_RS19410 at 4193.213 kb on + strand, within RR42_RS19410 at 4193.214 kb on - strand, within RR42_RS19410 at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.315 kb on + strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.316 kb on - strand at 4193.462 kb on + strand at 4193.462 kb on + strand at 4193.462 kb on + strand at 4193.462 kb on + strand at 4193.463 kb on - strand at 4193.463 kb on - strand at 4193.463 kb on - strand at 4193.484 kb on + strand at 4193.485 kb on - strand at 4193.485 kb on - strand at 4193.485 kb on - strand at 4193.581 kb on + strand at 4193.581 kb on + strand at 4193.581 kb on + strand at 4193.581 kb on + strand at 4193.590 kb on + strand at 4193.590 kb on + strand at 4193.631 kb on + strand at 4193.792 kb on + strand, within RR42_RS19415 at 4193.792 kb on + strand, within RR42_RS19415 at 4193.792 kb on + strand, within RR42_RS19415 at 4193.793 kb on - strand, within RR42_RS19415 at 4193.793 kb on - strand, within RR42_RS19415 at 4193.793 kb on - strand, within RR42_RS19415 at 4193.930 kb on + strand, within RR42_RS19415 at 4193.930 kb on + strand, within RR42_RS19415 at 4193.931 kb on - strand, within RR42_RS19415 at 4193.940 kb on + strand, within RR42_RS19415 at 4193.940 kb on + strand, within RR42_RS19415 at 4193.940 kb on + strand, within RR42_RS19415 at 4193.941 kb on - strand, within RR42_RS19415 at 4193.941 kb on - strand, within RR42_RS19415 at 4193.941 kb on - strand, within RR42_RS19415 at 4194.154 kb on - strand, within RR42_RS19415 at 4194.154 kb on - strand, within RR42_RS19415 at 4194.165 kb on + strand, within RR42_RS19415 at 4194.165 kb on + strand, within RR42_RS19415 at 4194.166 kb on - strand, within RR42_RS19415 at 4194.166 kb on - strand, within RR42_RS19415 at 4194.404 kb on + strand, within RR42_RS19415 at 4194.421 kb on + strand, within RR42_RS19415 at 4194.422 kb on - strand, within RR42_RS19415 at 4194.422 kb on - strand, within RR42_RS19415 at 4194.482 kb on - strand, within RR42_RS19415 at 4194.482 kb on - strand, within RR42_RS19415 at 4194.482 kb on - strand, within RR42_RS19415 at 4194.482 kb on - strand, within RR42_RS19415 at 4194.676 kb on + strand, within RR42_RS19415 at 4194.677 kb on - strand, within RR42_RS19415 at 4194.677 kb on - strand, within RR42_RS19415 at 4194.677 kb on - strand, within RR42_RS19415 at 4194.742 kb on + strand, within RR42_RS19415 at 4194.742 kb on + strand, within RR42_RS19415 at 4194.742 kb on + strand, within RR42_RS19415 at 4194.742 kb on + strand, within RR42_RS19415 at 4194.742 kb on + strand, within RR42_RS19415 at 4194.743 kb on - strand, within RR42_RS19415 at 4194.743 kb on - strand, within RR42_RS19415 at 4194.743 kb on - strand, within RR42_RS19415 at 4194.743 kb on - strand, within RR42_RS19415 at 4194.743 kb on - strand, within RR42_RS19415 at 4194.743 kb on - strand, within RR42_RS19415 at 4194.758 kb on - strand at 4194.758 kb on - strand at 4194.758 kb on - strand at 4194.853 kb on + strand at 4194.853 kb on + strand at 4194.853 kb on + strand at 4194.854 kb on - strand at 4194.885 kb on - strand at 4194.893 kb on - strand at 4194.965 kb on + strand at 4194.965 kb on + strand at 4194.966 kb on - strand at 4195.057 kb on + strand at 4195.057 kb on + strand at 4195.058 kb on - strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.059 kb on + strand at 4195.060 kb on - strand at 4195.060 kb on - strand at 4195.060 kb on - strand at 4195.060 kb on - strand at 4195.060 kb on - strand at 4195.060 kb on - strand at 4195.061 kb on + strand at 4195.062 kb on - strand at 4195.062 kb on - strand at 4195.062 kb on - strand at 4195.266 kb on + strand at 4195.316 kb on - strand at 4195.446 kb on - strand at 4195.446 kb on - strand at 4195.446 kb on - strand at 4195.502 kb on + strand at 4195.503 kb on - strand at 4195.503 kb on - strand at 4195.739 kb on + strand, within RR42_RS19420 at 4195.739 kb on + strand, within RR42_RS19420 at 4195.739 kb on + strand, within RR42_RS19420 at 4195.739 kb on + strand, within RR42_RS19420 at 4195.739 kb on + strand, within RR42_RS19420 at 4195.739 kb on + strand, within RR42_RS19420 at 4195.740 kb on - strand, within RR42_RS19420 at 4195.740 kb on - strand, within RR42_RS19420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,192,652 + -2.0 4,192,654 + -0.7 4,192,654 + -1.9 4,192,654 + -1.3 4,192,655 - -1.9 4,192,799 + RR42_RS19410 0.28 -2.1 4,192,799 + RR42_RS19410 0.28 -1.7 4,192,799 + RR42_RS19410 0.28 -1.4 4,192,800 - RR42_RS19410 0.28 -1.2 4,192,809 - RR42_RS19410 0.29 -0.6 4,192,824 - RR42_RS19410 0.31 -1.1 4,192,835 + RR42_RS19410 0.33 -0.4 4,192,836 - RR42_RS19410 0.33 -0.0 4,193,148 + RR42_RS19410 0.77 -0.2 4,193,148 + RR42_RS19410 0.77 -0.4 4,193,149 - RR42_RS19410 0.77 -1.3 4,193,149 - RR42_RS19410 0.77 -1.0 4,193,182 + RR42_RS19410 0.81 -2.0 4,193,213 + RR42_RS19410 0.86 -2.0 4,193,214 - RR42_RS19410 0.86 +1.5 4,193,315 + -0.6 4,193,315 + -0.8 4,193,315 + -0.4 4,193,315 + +0.0 4,193,315 + -0.5 4,193,316 - -0.0 4,193,316 - +0.3 4,193,316 - -1.4 4,193,316 - -0.9 4,193,316 - -1.0 4,193,462 + -0.3 4,193,462 + +0.4 4,193,462 + +0.4 4,193,462 + +0.6 4,193,463 - -0.0 4,193,463 - +0.2 4,193,463 - +0.3 4,193,484 + +0.1 4,193,485 - +1.4 4,193,485 - +1.5 4,193,485 - +0.5 4,193,581 + +0.1 4,193,581 + -0.5 4,193,581 + -0.3 4,193,581 + +0.4 4,193,590 + -0.4 4,193,590 + +0.4 4,193,631 + -0.1 4,193,792 + RR42_RS19415 0.14 -1.0 4,193,792 + RR42_RS19415 0.14 -0.2 4,193,792 + RR42_RS19415 0.14 +0.2 4,193,793 - RR42_RS19415 0.14 +0.4 4,193,793 - RR42_RS19415 0.14 +0.0 4,193,793 - RR42_RS19415 0.14 -0.3 4,193,930 + RR42_RS19415 0.25 +0.4 4,193,930 + RR42_RS19415 0.25 -0.8 4,193,931 - RR42_RS19415 0.25 +0.3 4,193,940 + RR42_RS19415 0.25 -0.2 4,193,940 + RR42_RS19415 0.25 +0.3 4,193,940 + RR42_RS19415 0.25 +0.1 4,193,941 - RR42_RS19415 0.25 +0.4 4,193,941 - RR42_RS19415 0.25 -0.5 4,193,941 - RR42_RS19415 0.25 +0.1 4,194,154 - RR42_RS19415 0.43 -0.8 4,194,154 - RR42_RS19415 0.43 -2.0 4,194,165 + RR42_RS19415 0.43 +0.1 4,194,165 + RR42_RS19415 0.43 -0.2 4,194,166 - RR42_RS19415 0.44 -0.8 4,194,166 - RR42_RS19415 0.44 -1.1 4,194,404 + RR42_RS19415 0.63 -0.7 4,194,421 + RR42_RS19415 0.64 +1.7 4,194,422 - RR42_RS19415 0.64 -2.6 4,194,422 - RR42_RS19415 0.64 -1.1 4,194,482 - RR42_RS19415 0.69 -0.4 4,194,482 - RR42_RS19415 0.69 -0.4 4,194,482 - RR42_RS19415 0.69 -0.3 4,194,482 - RR42_RS19415 0.69 +0.6 4,194,676 + RR42_RS19415 0.84 -0.6 4,194,677 - RR42_RS19415 0.84 +2.0 4,194,677 - RR42_RS19415 0.84 +0.5 4,194,677 - RR42_RS19415 0.84 +0.2 4,194,742 + RR42_RS19415 0.90 +0.2 4,194,742 + RR42_RS19415 0.90 -0.3 4,194,742 + RR42_RS19415 0.90 +0.4 4,194,742 + RR42_RS19415 0.90 -2.0 4,194,742 + RR42_RS19415 0.90 -0.2 4,194,743 - RR42_RS19415 0.90 -0.1 4,194,743 - RR42_RS19415 0.90 +0.6 4,194,743 - RR42_RS19415 0.90 +0.3 4,194,743 - RR42_RS19415 0.90 -1.2 4,194,743 - RR42_RS19415 0.90 +0.7 4,194,743 - RR42_RS19415 0.90 +0.1 4,194,758 - -1.8 4,194,758 - -0.2 4,194,758 - -1.4 4,194,853 + -0.6 4,194,853 + -0.1 4,194,853 + +0.7 4,194,854 - -0.4 4,194,885 - +0.8 4,194,893 - -0.0 4,194,965 + +1.2 4,194,965 + +0.6 4,194,966 - -2.5 4,195,057 + +0.0 4,195,057 + +0.3 4,195,058 - -0.1 4,195,059 + -0.1 4,195,059 + -0.0 4,195,059 + +0.6 4,195,059 + -1.5 4,195,059 + +0.0 4,195,059 + -1.4 4,195,059 + -1.4 4,195,059 + +0.4 4,195,059 + -0.4 4,195,060 - -0.6 4,195,060 - +0.1 4,195,060 - +0.1 4,195,060 - -0.5 4,195,060 - -0.6 4,195,060 - +0.2 4,195,061 + +1.3 4,195,062 - +0.2 4,195,062 - -0.9 4,195,062 - +0.3 4,195,266 + +0.6 4,195,316 - -0.2 4,195,446 - +0.7 4,195,446 - -0.0 4,195,446 - +0.0 4,195,502 + +0.3 4,195,503 - +0.1 4,195,503 - +0.7 4,195,739 + RR42_RS19420 0.17 -0.2 4,195,739 + RR42_RS19420 0.17 -0.4 4,195,739 + RR42_RS19420 0.17 -0.3 4,195,739 + RR42_RS19420 0.17 +0.5 4,195,739 + RR42_RS19420 0.17 -1.5 4,195,739 + RR42_RS19420 0.17 +0.1 4,195,740 - RR42_RS19420 0.17 -0.5 4,195,740 - RR42_RS19420 0.17 -0.3
Or see this region's nucleotide sequence