Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16975

Experiment: L-Isoleucine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (N)
3,673,112	+		RR42_RS16970	0.24	-2.1
3,673,112	+		RR42_RS16970	0.24	-2.7
3,673,112	+		RR42_RS16970	0.24	-3.7
3,673,113	-		RR42_RS16970	0.24	-1.1
3,673,361	+		RR42_RS16970	0.46	-2.3
3,673,362	-		RR42_RS16970	0.46	-2.4
3,673,362	-		RR42_RS16970	0.46	-3.4
3,673,362	-		RR42_RS16970	0.46	-2.8
3,673,364	+		RR42_RS16970	0.46	-2.6
3,673,364	+		RR42_RS16970	0.46	-4.3
3,673,364	+		RR42_RS16970	0.46	-2.8
3,673,364	+		RR42_RS16970	0.46	-0.0
3,673,365	-		RR42_RS16970	0.46	-2.4
3,673,365	-		RR42_RS16970	0.46	-2.1
3,673,365	-		RR42_RS16970	0.46	-3.4
3,673,367	+		RR42_RS16970	0.46	-2.0
3,673,367	+		RR42_RS16970	0.46	-4.6
3,673,367	+		RR42_RS16970	0.46	-0.7
3,673,367	+		RR42_RS16970	0.46	+0.1
3,673,368	-		RR42_RS16970	0.46	-2.3
3,673,368	-		RR42_RS16970	0.46	-1.1
3,673,368	-		RR42_RS16970	0.46	-1.2
3,673,368	-		RR42_RS16970	0.46	-3.6
3,673,553	+		RR42_RS16970	0.62	-2.9
3,673,553	+		RR42_RS16970	0.62	-1.8
3,673,553	+		RR42_RS16970	0.62	-1.8
3,673,554	-		RR42_RS16970	0.62	-2.1
3,673,728	-		RR42_RS16970	0.77	-2.7
3,673,742	+		RR42_RS16970	0.79	-1.1
3,673,742	+		RR42_RS16970	0.79	-0.2
3,673,743	-		RR42_RS16970	0.79	-4.1
3,673,754	+		RR42_RS16970	0.80	-2.0
3,673,754	+		RR42_RS16970	0.80	-2.6
3,673,755	-		RR42_RS16970	0.80	-2.0
3,673,802	-		RR42_RS16970	0.84	-3.7
3,673,817	+		RR42_RS16970	0.85	-1.8
3,673,817	+		RR42_RS16970	0.85	+0.3
3,673,817	+		RR42_RS16970	0.85	-3.2
3,673,817	+		RR42_RS16970	0.85	-1.5
3,673,817	+		RR42_RS16970	0.85	-1.4
3,673,850	+		RR42_RS16970	0.88	-2.3
3,673,851	-		RR42_RS16970	0.88	-0.6
3,673,851	-		RR42_RS16970	0.88	-0.7
3,673,851	-		RR42_RS16970	0.88	-0.4
3,673,983	+				-0.8
3,674,051	+				-1.4
3,674,051	+				-0.7
3,674,052	-				-2.9
3,674,094	+				-1.9
3,674,095	-				-2.5
3,674,095	-				-1.8
3,674,256	+		RR42_RS16975	0.27	+0.6
3,674,256	+		RR42_RS16975	0.27	-0.1
3,674,256	+		RR42_RS16975	0.27	-2.3
3,674,257	-		RR42_RS16975	0.27	-1.8
3,674,257	-		RR42_RS16975	0.27	-0.4
3,674,257	-		RR42_RS16975	0.27	-2.3
3,674,257	-		RR42_RS16975	0.27	-1.5
3,674,257	-		RR42_RS16975	0.27	-2.6
3,674,257	-		RR42_RS16975	0.27	-4.3
3,674,257	-		RR42_RS16975	0.27	-4.6
3,674,274	+		RR42_RS16975	0.29	-1.6
3,674,274	+		RR42_RS16975	0.29	+0.2
3,674,274	+		RR42_RS16975	0.29	-2.9
3,674,683	-		RR42_RS16975	0.73	-1.7
3,674,683	-		RR42_RS16975	0.73	-0.7
3,674,778	-		RR42_RS16975	0.83	-2.7
3,674,778	-		RR42_RS16975	0.83	-0.1
3,674,778	-		RR42_RS16975	0.83	-2.2
3,674,778	-		RR42_RS16975	0.83	-0.7
3,674,778	-		RR42_RS16975	0.83	-3.5
3,674,853	+				-2.5
3,674,854	-				-2.8
3,674,865	+				-1.1
3,674,865	+				-0.8
3,674,886	+				-1.7
3,674,886	+				-3.2
3,674,886	+				-1.4
3,674,886	+				-3.9
3,674,886	+				-1.5
3,674,886	+				-3.0
3,674,886	+				-1.9
3,674,887	-				-4.5
3,674,887	-				+0.3
3,674,887	-				-3.1
3,674,887	-				-1.1
3,674,887	-				-0.7
3,674,887	-				-2.2
3,674,932	+				-2.7
3,674,932	+				-3.1
3,675,000	+				-1.8
3,675,000	+				-0.0
3,675,000	+				-1.1
3,675,000	+				-2.7
3,675,000	+				-3.9
3,675,000	+				-1.0
3,675,001	-				+2.0
3,675,001	-				+2.1
3,675,001	-				+2.1
3,675,001	-				+1.7
3,675,001	-				+2.4
3,675,017	-				+2.1
3,675,017	-				+2.0
3,675,026	-				+2.0
3,675,026	-				+1.0
3,675,049	-				+2.7
3,675,049	-				+1.2
3,675,049	-				+2.4
3,675,049	-				+1.7
3,675,063	-				+1.3
3,675,077	+				-3.9
3,675,078	-				+2.6
3,675,078	-				+1.6
3,675,137	+				-2.5
3,675,148	+				-2.8
3,675,148	+				-1.6
3,675,148	+				-3.2
3,675,148	+				-1.0
3,675,190	+				-1.5
3,675,190	+				-2.1
3,675,190	+				-1.2
3,675,190	+				-3.1
3,675,190	+				-3.5
3,675,190	+				-3.1
3,675,191	-				-2.0
3,675,196	+				-3.0
3,675,196	+				-3.1
3,675,197	-				-2.0
3,675,197	-				-1.7
3,675,197	-				-3.4
3,675,197	-				-2.1
3,675,197	-				-2.1
3,675,265	+				-2.3
3,675,265	+				-3.0
3,675,266	-				-2.6
3,675,266	-				-0.8
3,675,266	-				-2.0
3,675,266	-				-1.4
3,675,266	-				-2.2
3,675,266	-				-3.2
3,675,355	+		RR42_RS16980	0.17	-2.1
3,675,355	+		RR42_RS16980	0.17	-3.5
3,675,355	+		RR42_RS16980	0.17	-3.1
3,675,355	+		RR42_RS16980	0.17	-2.5
3,675,356	-		RR42_RS16980	0.17	-2.9
3,675,356	-		RR42_RS16980	0.17	-4.5
3,675,356	-		RR42_RS16980	0.17	-0.7
3,675,370	+		RR42_RS16980	0.18	-1.6
3,675,370	+		RR42_RS16980	0.18	+0.4
3,675,370	+		RR42_RS16980	0.18	-3.1
3,675,371	-		RR42_RS16980	0.19	-2.1
3,675,371	-		RR42_RS16980	0.19	-1.1
3,675,371	-		RR42_RS16980	0.19	-2.4
3,675,371	-		RR42_RS16980	0.19	-3.5
3,675,604	+		RR42_RS16980	0.38	-2.7
3,675,605	-		RR42_RS16980	0.38	-3.5
3,675,605	-		RR42_RS16980	0.38	-2.3
3,675,605	-		RR42_RS16980	0.38	-2.8
3,675,605	-		RR42_RS16980	0.38	-2.3
3,675,605	-		RR42_RS16980	0.38	-2.0
3,675,605	-		RR42_RS16980	0.38	+0.9
3,675,605	-		RR42_RS16980	0.38	-1.2
3,675,605	-		RR42_RS16980	0.38	-2.9
3,675,605	-		RR42_RS16980	0.38	-3.1
3,675,605	-		RR42_RS16980	0.38	-2.7
3,675,605	-		RR42_RS16980	0.38	-4.1
3,675,808	+		RR42_RS16980	0.55	-1.8
3,675,808	+		RR42_RS16980	0.55	-2.1
3,675,808	+		RR42_RS16980	0.55	-3.4
3,675,808	+		RR42_RS16980	0.55	-2.0
3,675,809	-		RR42_RS16980	0.55	-0.7
3,675,809	-		RR42_RS16980	0.55	-1.8
3,675,809	-		RR42_RS16980	0.55	-3.5
3,675,809	-		RR42_RS16980	0.55	-2.7
3,675,809	-		RR42_RS16980	0.55	-2.5
3,675,809	-		RR42_RS16980	0.55	-2.7
3,675,809	-		RR42_RS16980	0.55	-1.7
3,675,809	-		RR42_RS16980	0.55	-2.2
3,675,809	-		RR42_RS16980	0.55	-0.6
3,675,812	+		RR42_RS16980	0.55	-2.5
3,675,883	+		RR42_RS16980	0.61	-2.1
3,675,884	-		RR42_RS16980	0.61	-1.5
3,675,932	+		RR42_RS16980	0.65	-0.2
3,675,934	+		RR42_RS16980	0.65	-1.1
3,675,934	+		RR42_RS16980	0.65	-3.1
3,675,934	+		RR42_RS16980	0.65	-2.5
3,675,934	+		RR42_RS16980	0.65	-1.4
3,675,934	+		RR42_RS16980	0.65	-0.6
3,675,934	+		RR42_RS16980	0.65	-2.5
3,675,934	+		RR42_RS16980	0.65	-2.7
3,675,934	+		RR42_RS16980	0.65	-3.6
3,675,935	-		RR42_RS16980	0.65	-2.5
3,675,935	-		RR42_RS16980	0.65	-2.0
3,675,935	-		RR42_RS16980	0.65	-2.8
3,675,935	-		RR42_RS16980	0.65	-4.0
3,675,935	-		RR42_RS16980	0.65	-1.1
3,675,935	-		RR42_RS16980	0.65	-3.6