Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11820

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11810 and RR42_RS11815 are separated by 14 nucleotidesRR42_RS11815 and RR42_RS11820 are separated by 101 nucleotidesRR42_RS11820 and RR42_RS11825 overlap by 4 nucleotides RR42_RS11810: RR42_RS11810 - lipid-A-disaccharide synthase, at 2,524,926 to 2,526,131 _RS11810 RR42_RS11815: RR42_RS11815 - UDP-N-acetylglucosamine acyltransferase, at 2,526,146 to 2,526,949 _RS11815 RR42_RS11820: RR42_RS11820 - 3-hydroxymyristoyl-ACP dehydratase, at 2,527,051 to 2,527,500 _RS11820 RR42_RS11825: RR42_RS11825 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 2,527,497 to 2,528,603 _RS11825 Position (kb) 2527 2528Strain fitness (log2 ratio) -1 0 1at 2527.008 kb on - strandat 2527.053 kb on - strandat 2527.053 kb on - strandat 2527.531 kb on - strandat 2527.531 kb on - strandat 2527.531 kb on - strandat 2527.531 kb on - strandat 2527.531 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,527,008 - -0.1
2,527,053 - +0.2
2,527,053 - -0.4
2,527,531 - -0.3
2,527,531 - +0.7
2,527,531 - -0.2
2,527,531 - +0.1
2,527,531 - +0.4

Or see this region's nucleotide sequence