Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06095

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06090 and RR42_RS06095 are separated by 27 nucleotidesRR42_RS06095 and RR42_RS06100 are separated by 160 nucleotides RR42_RS06090: RR42_RS06090 - single-stranded DNA exonuclease, at 1,335,759 to 1,337,456 _RS06090 RR42_RS06095: RR42_RS06095 - hypothetical protein, at 1,337,484 to 1,338,608 _RS06095 RR42_RS06100: RR42_RS06100 - cell division protein FtsX, at 1,338,769 to 1,340,019 _RS06100 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -2 -1 0 1 2at 1336.560 kb on + strand, within RR42_RS06090at 1336.870 kb on + strand, within RR42_RS06090at 1336.870 kb on + strand, within RR42_RS06090at 1336.871 kb on - strand, within RR42_RS06090at 1337.146 kb on + strand, within RR42_RS06090at 1337.147 kb on - strand, within RR42_RS06090at 1337.218 kb on + strand, within RR42_RS06090at 1337.219 kb on - strand, within RR42_RS06090at 1337.269 kb on + strand, within RR42_RS06090at 1337.495 kb on - strandat 1337.495 kb on - strandat 1337.974 kb on + strand, within RR42_RS06095at 1338.050 kb on + strand, within RR42_RS06095at 1338.350 kb on - strand, within RR42_RS06095at 1338.623 kb on - strandat 1338.623 kb on - strandat 1338.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,336,560 + RR42_RS06090 0.47 +0.4
1,336,870 + RR42_RS06090 0.65 +0.3
1,336,870 + RR42_RS06090 0.65 +0.0
1,336,871 - RR42_RS06090 0.65 +2.2
1,337,146 + RR42_RS06090 0.82 -0.1
1,337,147 - RR42_RS06090 0.82 -0.0
1,337,218 + RR42_RS06090 0.86 +0.1
1,337,219 - RR42_RS06090 0.86 -0.5
1,337,269 + RR42_RS06090 0.89 +0.1
1,337,495 - -0.1
1,337,495 - +1.0
1,337,974 + RR42_RS06095 0.44 -2.3
1,338,050 + RR42_RS06095 0.50 +0.6
1,338,350 - RR42_RS06095 0.77 -2.0
1,338,623 - -0.5
1,338,623 - +0.0
1,338,650 + +1.1

Or see this region's nucleotide sequence