Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05125

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05120 and RR42_RS05125 are separated by 189 nucleotidesRR42_RS05125 and RR42_RS05130 overlap by 4 nucleotidesRR42_RS05130 and RR42_RS05135 overlap by 4 nucleotides RR42_RS05120: RR42_RS05120 - ABC transporter substrate-binding protein, at 1,130,304 to 1,131,284 _RS05120 RR42_RS05125: RR42_RS05125 - malonic semialdehyde reductase, at 1,131,474 to 1,132,058 _RS05125 RR42_RS05130: RR42_RS05130 - 2-aminomuconate deaminase, at 1,132,055 to 1,132,468 _RS05130 RR42_RS05135: RR42_RS05135 - dihydrodipicolinate synthetase, at 1,132,465 to 1,133,379 _RS05135 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -2 -1 0 1at 1130.528 kb on + strand, within RR42_RS05120at 1130.548 kb on + strand, within RR42_RS05120at 1130.668 kb on + strand, within RR42_RS05120at 1130.809 kb on - strand, within RR42_RS05120at 1131.010 kb on + strand, within RR42_RS05120at 1131.011 kb on - strand, within RR42_RS05120at 1131.038 kb on - strand, within RR42_RS05120at 1131.674 kb on - strand, within RR42_RS05125at 1131.746 kb on - strand, within RR42_RS05125at 1131.959 kb on - strand, within RR42_RS05125at 1131.959 kb on - strand, within RR42_RS05125at 1132.128 kb on - strand, within RR42_RS05130at 1132.218 kb on + strand, within RR42_RS05130at 1132.218 kb on + strand, within RR42_RS05130at 1132.218 kb on + strand, within RR42_RS05130at 1132.219 kb on - strand, within RR42_RS05130at 1132.703 kb on + strand, within RR42_RS05135at 1132.704 kb on - strand, within RR42_RS05135at 1132.716 kb on + strand, within RR42_RS05135at 1132.961 kb on + strand, within RR42_RS05135at 1133.015 kb on + strand, within RR42_RS05135at 1133.016 kb on - strand, within RR42_RS05135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,130,528 + RR42_RS05120 0.23 -1.1
1,130,548 + RR42_RS05120 0.25 +1.5
1,130,668 + RR42_RS05120 0.37 -1.9
1,130,809 - RR42_RS05120 0.51 +0.1
1,131,010 + RR42_RS05120 0.72 +0.7
1,131,011 - RR42_RS05120 0.72 +0.6
1,131,038 - RR42_RS05120 0.75 -0.6
1,131,674 - RR42_RS05125 0.34 +0.7
1,131,746 - RR42_RS05125 0.46 +0.5
1,131,959 - RR42_RS05125 0.83 +0.8
1,131,959 - RR42_RS05125 0.83 -0.5
1,132,128 - RR42_RS05130 0.18 -0.9
1,132,218 + RR42_RS05130 0.39 -0.1
1,132,218 + RR42_RS05130 0.39 -0.3
1,132,218 + RR42_RS05130 0.39 +0.3
1,132,219 - RR42_RS05130 0.40 -0.3
1,132,703 + RR42_RS05135 0.26 -0.4
1,132,704 - RR42_RS05135 0.26 -0.2
1,132,716 + RR42_RS05135 0.27 -0.3
1,132,961 + RR42_RS05135 0.54 -0.3
1,133,015 + RR42_RS05135 0.60 -0.5
1,133,016 - RR42_RS05135 0.60 +0.6

Or see this region's nucleotide sequence