Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03815 and RR42_RS03820 are separated by 125 nucleotides RR42_RS03820 and RR42_RS03825 are separated by 110 nucleotides RR42_RS03825 and RR42_RS03830 are separated by 7 nucleotides RR42_RS03830 and RR42_RS03835 are separated by 6 nucleotides
RR42_RS03815: RR42_RS03815 - short-chain dehydrogenase, at 843,338 to 844,117
_RS03815
RR42_RS03820: RR42_RS03820 - molybdenum cofactor biosynthesis protein MoaA, at 844,243 to 844,485
_RS03820
RR42_RS03825: RR42_RS03825 - ModE family transcriptional regulator, at 844,596 to 845,399
_RS03825
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
RR42_RS03835: RR42_RS03835 - molybdate ABC transporter permease, at 846,136 to 846,807
_RS03835
Position (kb) 844
845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 843.786 kb on - strand, within RR42_RS03815 at 843.815 kb on + strand, within RR42_RS03815 at 843.864 kb on - strand, within RR42_RS03815 at 844.040 kb on + strand at 844.085 kb on + strand at 844.085 kb on + strand at 844.086 kb on - strand at 844.174 kb on - strand at 844.183 kb on + strand at 844.183 kb on + strand at 844.184 kb on - strand at 844.229 kb on - strand at 844.313 kb on - strand, within RR42_RS03820 at 844.313 kb on - strand, within RR42_RS03820 at 844.387 kb on - strand, within RR42_RS03820 at 844.462 kb on + strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.540 kb on - strand at 844.540 kb on - strand at 844.545 kb on - strand at 844.545 kb on - strand at 844.600 kb on + strand at 844.601 kb on - strand at 844.601 kb on - strand at 844.732 kb on - strand, within RR42_RS03825 at 844.864 kb on - strand, within RR42_RS03825 at 845.078 kb on - strand, within RR42_RS03825 at 845.436 kb on - strand at 845.599 kb on + strand, within RR42_RS03830 at 845.864 kb on + strand, within RR42_RS03830 at 845.879 kb on + strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 846.110 kb on - strand at 846.110 kb on - strand at 846.137 kb on + strand at 846.263 kb on + strand, within RR42_RS03835 at 846.263 kb on + strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 843,786 - RR42_RS03815 0.57 +1.0 843,815 + RR42_RS03815 0.61 -0.8 843,864 - RR42_RS03815 0.67 +0.0 844,040 + -0.6 844,085 + +0.3 844,085 + -0.7 844,086 - -0.3 844,174 - -0.8 844,183 + +0.9 844,183 + +0.2 844,184 - +1.2 844,229 - -0.0 844,313 - RR42_RS03820 0.29 -0.3 844,313 - RR42_RS03820 0.29 +0.5 844,387 - RR42_RS03820 0.59 +0.4 844,462 + +0.5 844,463 - -3.4 844,463 - -0.3 844,463 - -0.5 844,463 - -0.0 844,463 - +1.8 844,540 - +0.2 844,540 - +0.1 844,545 - -1.0 844,545 - -0.6 844,600 + -0.3 844,601 - -0.4 844,601 - -0.7 844,732 - RR42_RS03825 0.17 -2.5 844,864 - RR42_RS03825 0.33 -0.3 845,078 - RR42_RS03825 0.60 -0.4 845,436 - -0.4 845,599 + RR42_RS03830 0.27 -0.0 845,864 + RR42_RS03830 0.63 -0.5 845,879 + RR42_RS03830 0.65 +0.4 845,880 - RR42_RS03830 0.65 -0.0 845,880 - RR42_RS03830 0.65 -0.6 846,110 - +0.0 846,110 - +0.3 846,137 + +0.1 846,263 + RR42_RS03835 0.19 -0.5 846,263 + RR42_RS03835 0.19 +0.5 846,264 - RR42_RS03835 0.19 +1.2 846,264 - RR42_RS03835 0.19 +0.2
Or see this region's nucleotide sequence