Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03565

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03560 and RR42_RS03565 are separated by 708 nucleotidesRR42_RS03565 and RR42_RS03570 are separated by 396 nucleotidesRR42_RS03570 and RR42_RS03575 are separated by 4 nucleotides RR42_RS03560: RR42_RS03560 - hypothetical protein, at 792,727 to 793,317 _RS03560 RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631 _RS03565 RR42_RS03570: RR42_RS03570 - membrane protein, at 795,028 to 795,501 _RS03570 RR42_RS03575: RR42_RS03575 - type VI secretion protein, at 795,506 to 796,849 _RS03575 Position (kb) 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 793.385 kb on + strandat 793.386 kb on - strandat 793.386 kb on - strandat 793.438 kb on - strandat 793.452 kb on + strandat 793.576 kb on + strandat 793.669 kb on + strandat 793.683 kb on + strandat 793.684 kb on - strandat 793.698 kb on + strandat 793.824 kb on + strandat 793.860 kb on + strandat 793.861 kb on - strandat 793.867 kb on + strandat 793.867 kb on + strandat 793.868 kb on - strandat 794.107 kb on - strand, within RR42_RS03565at 794.185 kb on + strand, within RR42_RS03565at 794.185 kb on + strand, within RR42_RS03565at 794.186 kb on - strand, within RR42_RS03565at 794.212 kb on - strand, within RR42_RS03565at 794.232 kb on - strand, within RR42_RS03565at 794.731 kb on + strandat 794.732 kb on - strandat 794.750 kb on - strandat 794.849 kb on + strandat 794.849 kb on + strandat 794.849 kb on + strandat 795.014 kb on - strandat 795.019 kb on + strandat 795.166 kb on + strand, within RR42_RS03570at 795.167 kb on - strand, within RR42_RS03570at 795.167 kb on - strand, within RR42_RS03570at 795.167 kb on - strand, within RR42_RS03570at 795.205 kb on + strand, within RR42_RS03570at 795.205 kb on + strand, within RR42_RS03570at 795.385 kb on + strand, within RR42_RS03570at 795.429 kb on - strand, within RR42_RS03570at 795.486 kb on + strandat 795.517 kb on + strandat 795.594 kb on - strandat 795.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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793,385 + +0.8
793,386 - -0.6
793,386 - -1.2
793,438 - +0.3
793,452 + +0.4
793,576 + -0.4
793,669 + -0.7
793,683 + -0.7
793,684 - +0.1
793,698 + -1.1
793,824 + +0.5
793,860 + -2.3
793,861 - +0.4
793,867 + -0.3
793,867 + -1.0
793,868 - +2.7
794,107 - RR42_RS03565 0.13 -1.7
794,185 + RR42_RS03565 0.26 -0.4
794,185 + RR42_RS03565 0.26 -1.5
794,186 - RR42_RS03565 0.26 -0.2
794,212 - RR42_RS03565 0.31 +0.3
794,232 - RR42_RS03565 0.34 -2.2
794,731 + +0.8
794,732 - +0.1
794,750 - -0.4
794,849 + -1.7
794,849 + +0.2
794,849 + +0.7
795,014 - +1.7
795,019 + -1.0
795,166 + RR42_RS03570 0.29 -0.5
795,167 - RR42_RS03570 0.29 -1.5
795,167 - RR42_RS03570 0.29 -0.1
795,167 - RR42_RS03570 0.29 -0.3
795,205 + RR42_RS03570 0.37 +0.0
795,205 + RR42_RS03570 0.37 +0.1
795,385 + RR42_RS03570 0.75 -2.0
795,429 - RR42_RS03570 0.85 -0.2
795,486 + +0.2
795,517 + +1.3
795,594 - -1.5
795,601 + +0.3

Or see this region's nucleotide sequence