Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03560 and RR42_RS03565 are separated by 708 nucleotides RR42_RS03565 and RR42_RS03570 are separated by 396 nucleotides RR42_RS03570 and RR42_RS03575 are separated by 4 nucleotides
RR42_RS03560: RR42_RS03560 - hypothetical protein, at 792,727 to 793,317
_RS03560
RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631
_RS03565
RR42_RS03570: RR42_RS03570 - membrane protein, at 795,028 to 795,501
_RS03570
RR42_RS03575: RR42_RS03575 - type VI secretion protein, at 795,506 to 796,849
_RS03575
Position (kb)
794
795 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 793.385 kb on + strand at 793.386 kb on - strand at 793.386 kb on - strand at 793.438 kb on - strand at 793.452 kb on + strand at 793.576 kb on + strand at 793.669 kb on + strand at 793.683 kb on + strand at 793.684 kb on - strand at 793.698 kb on + strand at 793.824 kb on + strand at 793.860 kb on + strand at 793.861 kb on - strand at 793.867 kb on + strand at 793.867 kb on + strand at 793.868 kb on - strand at 794.107 kb on - strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.186 kb on - strand, within RR42_RS03565 at 794.212 kb on - strand, within RR42_RS03565 at 794.232 kb on - strand, within RR42_RS03565 at 794.731 kb on + strand at 794.732 kb on - strand at 794.750 kb on - strand at 794.849 kb on + strand at 794.849 kb on + strand at 794.849 kb on + strand at 795.014 kb on - strand at 795.019 kb on + strand at 795.166 kb on + strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.205 kb on + strand, within RR42_RS03570 at 795.205 kb on + strand, within RR42_RS03570 at 795.385 kb on + strand, within RR42_RS03570 at 795.429 kb on - strand, within RR42_RS03570 at 795.486 kb on + strand at 795.517 kb on + strand at 795.594 kb on - strand at 795.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 793,385 + +0.8 793,386 - -0.6 793,386 - -1.2 793,438 - +0.3 793,452 + +0.4 793,576 + -0.4 793,669 + -0.7 793,683 + -0.7 793,684 - +0.1 793,698 + -1.1 793,824 + +0.5 793,860 + -2.3 793,861 - +0.4 793,867 + -0.3 793,867 + -1.0 793,868 - +2.7 794,107 - RR42_RS03565 0.13 -1.7 794,185 + RR42_RS03565 0.26 -0.4 794,185 + RR42_RS03565 0.26 -1.5 794,186 - RR42_RS03565 0.26 -0.2 794,212 - RR42_RS03565 0.31 +0.3 794,232 - RR42_RS03565 0.34 -2.2 794,731 + +0.8 794,732 - +0.1 794,750 - -0.4 794,849 + -1.7 794,849 + +0.2 794,849 + +0.7 795,014 - +1.7 795,019 + -1.0 795,166 + RR42_RS03570 0.29 -0.5 795,167 - RR42_RS03570 0.29 -1.5 795,167 - RR42_RS03570 0.29 -0.1 795,167 - RR42_RS03570 0.29 -0.3 795,205 + RR42_RS03570 0.37 +0.0 795,205 + RR42_RS03570 0.37 +0.1 795,385 + RR42_RS03570 0.75 -2.0 795,429 - RR42_RS03570 0.85 -0.2 795,486 + +0.2 795,517 + +1.3 795,594 - -1.5 795,601 + +0.3
Or see this region's nucleotide sequence