Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00645

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00640 and RR42_RS00645 overlap by 4 nucleotidesRR42_RS00645 and RR42_RS00650 are separated by 95 nucleotidesRR42_RS00650 and RR42_RS00655 are separated by 125 nucleotides RR42_RS00640: RR42_RS00640 - allophanate hydrolase, at 166,582 to 167,232 _RS00640 RR42_RS00645: RR42_RS00645 - allophanate hydrolase, at 167,229 to 168,251 _RS00645 RR42_RS00650: RR42_RS00650 - hypothetical protein, at 168,347 to 169,087 _RS00650 RR42_RS00655: RR42_RS00655 - membrane protein, at 169,213 to 169,950 _RS00655 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1 2at 166.397 kb on + strandat 166.411 kb on + strandat 166.412 kb on - strandat 166.424 kb on + strandat 166.424 kb on + strandat 166.424 kb on + strandat 166.424 kb on + strandat 166.449 kb on + strandat 166.467 kb on - strandat 166.528 kb on + strandat 166.529 kb on - strandat 166.529 kb on - strandat 166.546 kb on + strandat 166.546 kb on + strandat 166.546 kb on + strandat 166.546 kb on + strandat 166.546 kb on + strandat 166.653 kb on - strand, within RR42_RS00640at 166.653 kb on - strand, within RR42_RS00640at 166.653 kb on - strand, within RR42_RS00640at 166.658 kb on + strand, within RR42_RS00640at 166.658 kb on + strand, within RR42_RS00640at 166.658 kb on + strand, within RR42_RS00640at 166.659 kb on - strand, within RR42_RS00640at 166.659 kb on - strand, within RR42_RS00640at 166.659 kb on - strand, within RR42_RS00640at 166.659 kb on - strand, within RR42_RS00640at 166.659 kb on - strand, within RR42_RS00640at 166.659 kb on - strand, within RR42_RS00640at 166.668 kb on + strand, within RR42_RS00640at 166.668 kb on + strand, within RR42_RS00640at 166.668 kb on + strand, within RR42_RS00640at 166.669 kb on - strand, within RR42_RS00640at 166.951 kb on + strand, within RR42_RS00640at 166.960 kb on + strand, within RR42_RS00640at 166.960 kb on + strand, within RR42_RS00640at 166.961 kb on - strand, within RR42_RS00640at 166.961 kb on - strand, within RR42_RS00640at 166.990 kb on + strand, within RR42_RS00640at 166.990 kb on + strand, within RR42_RS00640at 166.990 kb on + strand, within RR42_RS00640at 166.990 kb on + strand, within RR42_RS00640at 166.991 kb on - strand, within RR42_RS00640at 166.991 kb on - strand, within RR42_RS00640at 166.991 kb on - strand, within RR42_RS00640at 166.992 kb on + strand, within RR42_RS00640at 166.992 kb on + strand, within RR42_RS00640at 166.993 kb on - strand, within RR42_RS00640at 167.095 kb on + strand, within RR42_RS00640at 167.562 kb on + strand, within RR42_RS00645at 167.562 kb on + strand, within RR42_RS00645at 167.562 kb on + strand, within RR42_RS00645at 167.562 kb on + strand, within RR42_RS00645at 167.563 kb on - strand, within RR42_RS00645at 168.157 kb on - strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.283 kb on - strandat 168.581 kb on + strand, within RR42_RS00650at 168.581 kb on + strand, within RR42_RS00650at 168.582 kb on - strand, within RR42_RS00650at 168.596 kb on + strand, within RR42_RS00650at 168.597 kb on - strand, within RR42_RS00650at 168.597 kb on - strand, within RR42_RS00650at 168.597 kb on - strand, within RR42_RS00650at 168.675 kb on - strand, within RR42_RS00650at 168.839 kb on + strand, within RR42_RS00650at 168.839 kb on + strand, within RR42_RS00650at 168.840 kb on - strand, within RR42_RS00650at 168.840 kb on - strand, within RR42_RS00650at 168.840 kb on - strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.969 kb on + strand, within RR42_RS00650at 169.103 kb on + strandat 169.104 kb on - strandat 169.104 kb on - strandat 169.199 kb on + strandat 169.199 kb on + strandat 169.200 kb on - strandat 169.200 kb on - strandat 169.241 kb on + strandat 169.241 kb on + strandat 169.242 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
166,397 + -1.2
166,411 + +0.7
166,412 - +0.4
166,424 + -0.4
166,424 + -0.1
166,424 + -0.4
166,424 + +0.8
166,449 + -2.6
166,467 - +0.3
166,528 + -2.4
166,529 - +1.5
166,529 - -0.1
166,546 + -0.9
166,546 + -0.4
166,546 + +0.3
166,546 + +0.5
166,546 + +0.2
166,653 - RR42_RS00640 0.11 -0.0
166,653 - RR42_RS00640 0.11 -1.0
166,653 - RR42_RS00640 0.11 +0.2
166,658 + RR42_RS00640 0.12 -0.0
166,658 + RR42_RS00640 0.12 +0.3
166,658 + RR42_RS00640 0.12 -1.4
166,659 - RR42_RS00640 0.12 -0.8
166,659 - RR42_RS00640 0.12 +1.1
166,659 - RR42_RS00640 0.12 +0.4
166,659 - RR42_RS00640 0.12 +0.5
166,659 - RR42_RS00640 0.12 -0.0
166,659 - RR42_RS00640 0.12 +0.7
166,668 + RR42_RS00640 0.13 +1.4
166,668 + RR42_RS00640 0.13 +0.1
166,668 + RR42_RS00640 0.13 -1.1
166,669 - RR42_RS00640 0.13 +1.3
166,951 + RR42_RS00640 0.57 -1.0
166,960 + RR42_RS00640 0.58 +0.5
166,960 + RR42_RS00640 0.58 +0.3
166,961 - RR42_RS00640 0.58 +0.2
166,961 - RR42_RS00640 0.58 +0.5
166,990 + RR42_RS00640 0.63 +0.1
166,990 + RR42_RS00640 0.63 -0.4
166,990 + RR42_RS00640 0.63 -0.3
166,990 + RR42_RS00640 0.63 +0.6
166,991 - RR42_RS00640 0.63 +1.1
166,991 - RR42_RS00640 0.63 -0.1
166,991 - RR42_RS00640 0.63 +0.3
166,992 + RR42_RS00640 0.63 +0.0
166,992 + RR42_RS00640 0.63 -0.5
166,993 - RR42_RS00640 0.63 -0.2
167,095 + RR42_RS00640 0.79 -0.0
167,562 + RR42_RS00645 0.33 -1.9
167,562 + RR42_RS00645 0.33 -0.5
167,562 + RR42_RS00645 0.33 +0.1
167,562 + RR42_RS00645 0.33 -0.6
167,563 - RR42_RS00645 0.33 -0.7
168,157 - +0.4
168,282 + -0.5
168,282 + -0.2
168,282 + -0.4
168,282 + +1.0
168,282 + -2.6
168,283 - -0.6
168,581 + RR42_RS00650 0.32 -0.1
168,581 + RR42_RS00650 0.32 +0.5
168,582 - RR42_RS00650 0.32 -0.0
168,596 + RR42_RS00650 0.34 +0.8
168,597 - RR42_RS00650 0.34 +0.1
168,597 - RR42_RS00650 0.34 -0.7
168,597 - RR42_RS00650 0.34 +0.2
168,675 - RR42_RS00650 0.44 -1.2
168,839 + RR42_RS00650 0.66 -0.0
168,839 + RR42_RS00650 0.66 +0.7
168,840 - RR42_RS00650 0.67 +0.1
168,840 - RR42_RS00650 0.67 -1.9
168,840 - RR42_RS00650 0.67 -1.0
168,965 + RR42_RS00650 0.83 -1.5
168,965 + RR42_RS00650 0.83 -0.1
168,965 + RR42_RS00650 0.83 +0.5
168,965 + RR42_RS00650 0.83 -0.4
168,965 + RR42_RS00650 0.83 +0.1
168,965 + RR42_RS00650 0.83 -0.1
168,966 - RR42_RS00650 0.84 +0.3
168,966 - RR42_RS00650 0.84 -0.7
168,966 - RR42_RS00650 0.84 -0.6
168,966 - RR42_RS00650 0.84 +0.8
168,966 - RR42_RS00650 0.84 -0.2
168,966 - RR42_RS00650 0.84 +0.4
168,966 - RR42_RS00650 0.84 +0.4
168,966 - RR42_RS00650 0.84 -1.0
168,966 - RR42_RS00650 0.84 -0.5
168,969 + RR42_RS00650 0.84 +0.6
169,103 + -0.0
169,104 - +0.4
169,104 - -0.4
169,199 + +0.2
169,199 + +2.1
169,200 - +0.5
169,200 - -0.1
169,241 + +0.2
169,241 + -0.4
169,242 - -1.3

Or see this region's nucleotide sequence