Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5460

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5459 and Pf1N1B4_5460 are separated by 173 nucleotidesPf1N1B4_5460 and Pf1N1B4_5461 are separated by 307 nucleotides Pf1N1B4_5459 - possible integrase-like protein, at 205,846 to 206,937 _5459 Pf1N1B4_5460 - TolA protein, at 207,111 to 207,977 _5460 Pf1N1B4_5461 - hypothetical protein, at 208,285 to 208,695 _5461 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 206.169 kb on + strand, within Pf1N1B4_5459at 206.169 kb on + strand, within Pf1N1B4_5459at 206.169 kb on + strand, within Pf1N1B4_5459at 206.170 kb on - strand, within Pf1N1B4_5459at 206.170 kb on - strand, within Pf1N1B4_5459at 206.170 kb on - strand, within Pf1N1B4_5459at 206.170 kb on - strandat 206.270 kb on + strand, within Pf1N1B4_5459at 206.270 kb on + strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.317 kb on - strand, within Pf1N1B4_5459at 206.379 kb on + strand, within Pf1N1B4_5459at 206.379 kb on + strand, within Pf1N1B4_5459at 206.381 kb on + strand, within Pf1N1B4_5459at 206.381 kb on + strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.382 kb on - strand, within Pf1N1B4_5459at 206.404 kb on + strand, within Pf1N1B4_5459at 206.405 kb on - strand, within Pf1N1B4_5459at 206.405 kb on - strand, within Pf1N1B4_5459at 206.456 kb on - strand, within Pf1N1B4_5459at 206.456 kb on - strand, within Pf1N1B4_5459at 206.505 kb on + strandat 206.555 kb on + strand, within Pf1N1B4_5459at 206.575 kb on - strand, within Pf1N1B4_5459at 206.656 kb on - strand, within Pf1N1B4_5459at 206.703 kb on + strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.704 kb on - strand, within Pf1N1B4_5459at 206.720 kb on + strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.721 kb on - strand, within Pf1N1B4_5459at 206.744 kb on + strandat 206.744 kb on + strand, within Pf1N1B4_5459at 206.744 kb on + strand, within Pf1N1B4_5459at 206.745 kb on - strand, within Pf1N1B4_5459at 206.819 kb on + strandat 206.832 kb on + strandat 206.832 kb on + strandat 206.833 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.859 kb on - strandat 206.938 kb on - strandat 206.938 kb on - strandat 207.013 kb on + strandat 207.013 kb on + strandat 207.014 kb on - strandat 207.014 kb on - strandat 207.014 kb on - strandat 207.014 kb on - strandat 207.050 kb on - strandat 207.194 kb on + strandat 207.195 kb on - strandat 207.195 kb on - strandat 207.195 kb on - strandat 207.245 kb on + strand, within Pf1N1B4_5460at 207.246 kb on - strandat 207.515 kb on + strand, within Pf1N1B4_5460at 207.516 kb on - strand, within Pf1N1B4_5460at 207.935 kb on + strandat 208.050 kb on + strandat 208.051 kb on - strandat 208.051 kb on - strandat 208.051 kb on - strandat 208.051 kb on - strandat 208.070 kb on + strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.071 kb on - strandat 208.273 kb on - strandat 208.276 kb on + strandat 208.276 kb on + strandat 208.324 kb on + strandat 208.324 kb on + strandat 208.325 kb on - strandat 208.325 kb on - strandat 208.377 kb on - strand, within Pf1N1B4_5461at 208.377 kb on - strand, within Pf1N1B4_5461at 208.377 kb on - strand, within Pf1N1B4_5461at 208.377 kb on - strand, within Pf1N1B4_5461at 208.411 kb on + strand, within Pf1N1B4_5461at 208.412 kb on - strand, within Pf1N1B4_5461at 208.526 kb on - strand, within Pf1N1B4_5461at 208.553 kb on - strand, within Pf1N1B4_5461at 208.553 kb on - strand, within Pf1N1B4_5461at 208.557 kb on - strand, within Pf1N1B4_5461at 208.557 kb on - strand, within Pf1N1B4_5461at 208.618 kb on - strandat 208.667 kb on + strandat 208.668 kb on - strandat 208.726 kb on + strandat 208.727 kb on - strandat 208.727 kb on - strandat 208.727 kb on - strandat 208.727 kb on - strandat 208.918 kb on + strandat 208.918 kb on + strandat 208.933 kb on - strandat 208.933 kb on - strandat 208.972 kb on - strandat 208.972 kb on - strandat 208.972 kb on - strandat 208.975 kb on + strandat 208.976 kb on - strandat 208.976 kb on - strandat 208.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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206,169 + Pf1N1B4_5459 0.30 +0.4
206,169 + Pf1N1B4_5459 0.30 -0.5
206,169 + Pf1N1B4_5459 0.30 -0.0
206,170 - Pf1N1B4_5459 0.30 -1.6
206,170 - Pf1N1B4_5459 0.30 +0.3
206,170 - Pf1N1B4_5459 0.30 +0.2
206,170 - +1.1
206,270 + Pf1N1B4_5459 0.39 +0.1
206,270 + Pf1N1B4_5459 0.39 +0.7
206,317 - Pf1N1B4_5459 0.43 -0.3
206,317 - Pf1N1B4_5459 0.43 -0.9
206,317 - Pf1N1B4_5459 0.43 +0.3
206,317 - Pf1N1B4_5459 0.43 +0.8
206,379 + Pf1N1B4_5459 0.49 +0.7
206,379 + Pf1N1B4_5459 0.49 +0.2
206,381 + Pf1N1B4_5459 0.49 +0.3
206,381 + Pf1N1B4_5459 0.49 -1.5
206,382 - Pf1N1B4_5459 0.49 -0.7
206,382 - Pf1N1B4_5459 0.49 -1.3
206,382 - Pf1N1B4_5459 0.49 +0.2
206,382 - Pf1N1B4_5459 0.49 -0.9
206,382 - Pf1N1B4_5459 0.49 -1.6
206,382 - Pf1N1B4_5459 0.49 +1.1
206,404 + Pf1N1B4_5459 0.51 -0.0
206,405 - Pf1N1B4_5459 0.51 -0.6
206,405 - Pf1N1B4_5459 0.51 +1.6
206,456 - Pf1N1B4_5459 0.56 -0.6
206,456 - Pf1N1B4_5459 0.56 +0.7
206,505 + +1.7
206,555 + Pf1N1B4_5459 0.65 -1.2
206,575 - Pf1N1B4_5459 0.67 -0.9
206,656 - Pf1N1B4_5459 0.74 +0.8
206,703 + Pf1N1B4_5459 0.78 +0.7
206,704 - Pf1N1B4_5459 0.79 +0.5
206,704 - Pf1N1B4_5459 0.79 -0.7
206,704 - Pf1N1B4_5459 0.79 +1.3
206,704 - Pf1N1B4_5459 0.79 -0.3
206,704 - Pf1N1B4_5459 0.79 +0.4
206,720 + Pf1N1B4_5459 0.80 +0.5
206,721 - Pf1N1B4_5459 0.80 -0.5
206,721 - Pf1N1B4_5459 0.80 -0.1
206,721 - Pf1N1B4_5459 0.80 -0.8
206,721 - Pf1N1B4_5459 0.80 +0.0
206,744 + +2.6
206,744 + Pf1N1B4_5459 0.82 +0.5
206,744 + Pf1N1B4_5459 0.82 -0.7
206,745 - Pf1N1B4_5459 0.82 -0.9
206,819 + -1.6
206,832 + +0.4
206,832 + -0.5
206,833 - -0.9
206,859 - +1.4
206,859 - +1.3
206,859 - -0.7
206,859 - +0.1
206,859 - -2.6
206,859 - -0.5
206,938 - +0.4
206,938 - +0.0
207,013 + +1.0
207,013 + +0.1
207,014 - -0.6
207,014 - -0.7
207,014 - -0.1
207,014 - +2.5
207,050 - -0.3
207,194 + -1.2
207,195 - -0.8
207,195 - +0.4
207,195 - -0.1
207,245 + Pf1N1B4_5460 0.15 -0.6
207,246 - -0.3
207,515 + Pf1N1B4_5460 0.47 +0.3
207,516 - Pf1N1B4_5460 0.47 -0.8
207,935 + -1.0
208,050 + +0.7
208,051 - +0.7
208,051 - +0.3
208,051 - +0.1
208,051 - -1.9
208,070 + -2.3
208,071 - -0.8
208,071 - +0.2
208,071 - +0.7
208,071 - +1.2
208,071 - -0.5
208,273 - -0.5
208,276 + +0.6
208,276 + -0.1
208,324 + +0.1
208,324 + +0.4
208,325 - +1.0
208,325 - -0.2
208,377 - Pf1N1B4_5461 0.22 -2.3
208,377 - Pf1N1B4_5461 0.22 +0.0
208,377 - Pf1N1B4_5461 0.22 -1.3
208,377 - Pf1N1B4_5461 0.22 +0.7
208,411 + Pf1N1B4_5461 0.31 -0.3
208,412 - Pf1N1B4_5461 0.31 +1.3
208,526 - Pf1N1B4_5461 0.59 -1.8
208,553 - Pf1N1B4_5461 0.65 +0.7
208,553 - Pf1N1B4_5461 0.65 +0.8
208,557 - Pf1N1B4_5461 0.66 -1.5
208,557 - Pf1N1B4_5461 0.66 -0.1
208,618 - +1.1
208,667 + +0.1
208,668 - +0.5
208,726 + -0.3
208,727 - -0.5
208,727 - -0.7
208,727 - -1.3
208,727 - -0.1
208,918 + +1.7
208,918 + -0.5
208,933 - +0.2
208,933 - -0.8
208,972 - -0.2
208,972 - +0.5
208,972 - -1.1
208,975 + +1.1
208,976 - -1.6
208,976 - -0.0
208,976 - -1.0

Or see this region's nucleotide sequence