Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5119

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5117 and Pf1N1B4_5118 are separated by 52 nucleotidesPf1N1B4_5118 and Pf1N1B4_5119 are separated by 542 nucleotidesPf1N1B4_5119 and Pf1N1B4_5120 are separated by 12 nucleotidesPf1N1B4_5120 and Pf1N1B4_5121 are separated by 147 nucleotides Pf1N1B4_5117 - Sucrose specific transcriptional regulator CscR, LacI family, at 5,677,470 to 5,678,453 _5117 Pf1N1B4_5118 - hypothetical protein, at 5,678,506 to 5,678,868 _5118 Pf1N1B4_5119 - Putative hemagglutinin/hemolysin-related protein, at 5,679,411 to 5,682,128 _5119 Pf1N1B4_5120 - hypothetical protein, at 5,682,141 to 5,682,260 _5120 Pf1N1B4_5121 - hypothetical protein, at 5,682,408 to 5,687,864 _5121 Position (kb) 5679 5680 5681 5682 5683Strain fitness (log2 ratio) -1 0 1 2at 5678.709 kb on - strandat 5678.709 kb on - strand, within Pf1N1B4_5118at 5678.868 kb on + strandat 5678.869 kb on - strandat 5678.892 kb on + strandat 5678.895 kb on + strandat 5679.007 kb on + strandat 5679.008 kb on - strandat 5679.008 kb on - strandat 5679.008 kb on - strandat 5679.133 kb on - strandat 5679.133 kb on - strandat 5679.233 kb on + strandat 5679.603 kb on + strandat 5679.759 kb on - strand, within Pf1N1B4_5119at 5680.130 kb on + strandat 5681.058 kb on + strand, within Pf1N1B4_5119at 5681.059 kb on - strand, within Pf1N1B4_5119at 5681.296 kb on + strand, within Pf1N1B4_5119at 5681.297 kb on - strand, within Pf1N1B4_5119at 5681.392 kb on + strand, within Pf1N1B4_5119at 5681.538 kb on + strand, within Pf1N1B4_5119at 5681.539 kb on - strand, within Pf1N1B4_5119at 5681.539 kb on - strand, within Pf1N1B4_5119at 5681.539 kb on - strand, within Pf1N1B4_5119at 5681.541 kb on + strand, within Pf1N1B4_5119at 5681.928 kb on + strandat 5682.321 kb on + strandat 5682.321 kb on + strandat 5682.328 kb on - strandat 5682.542 kb on + strandat 5683.121 kb on + strand, within Pf1N1B4_5121

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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5,678,709 - +0.3
5,678,709 - Pf1N1B4_5118 0.56 -0.9
5,678,868 + -1.7
5,678,869 - +0.3
5,678,892 + +0.3
5,678,895 + -0.6
5,679,007 + -0.7
5,679,008 - +0.3
5,679,008 - -0.4
5,679,008 - +0.3
5,679,133 - -1.0
5,679,133 - +1.7
5,679,233 + +0.3
5,679,603 + -0.7
5,679,759 - Pf1N1B4_5119 0.13 +1.6
5,680,130 + -1.7
5,681,058 + Pf1N1B4_5119 0.61 -0.7
5,681,059 - Pf1N1B4_5119 0.61 -0.5
5,681,296 + Pf1N1B4_5119 0.69 -1.0
5,681,297 - Pf1N1B4_5119 0.69 -0.5
5,681,392 + Pf1N1B4_5119 0.73 -1.0
5,681,538 + Pf1N1B4_5119 0.78 -1.6
5,681,539 - Pf1N1B4_5119 0.78 +0.6
5,681,539 - Pf1N1B4_5119 0.78 -1.6
5,681,539 - Pf1N1B4_5119 0.78 +0.3
5,681,541 + Pf1N1B4_5119 0.78 -0.4
5,681,928 + -0.3
5,682,321 + +0.3
5,682,321 + -0.1
5,682,328 - -0.6
5,682,542 + -0.6
5,683,121 + Pf1N1B4_5121 0.13 +2.5

Or see this region's nucleotide sequence