Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5113
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,671,993 | - | Pf1N1B4_5112 | 0.23 | -1.3 | |
5,672,043 | - | Pf1N1B4_5112 | 0.28 | -1.3 | |
5,672,069 | + | Pf1N1B4_5112 | 0.30 | -0.3 | |
5,672,070 | - | Pf1N1B4_5112 | 0.30 | -0.3 | |
5,672,168 | + | +0.8 | |||
5,672,169 | - | Pf1N1B4_5112 | 0.38 | +0.3 | |
5,672,411 | - | Pf1N1B4_5112 | 0.59 | +0.6 | |
5,672,639 | + | +1.8 | |||
5,672,640 | - | Pf1N1B4_5112 | 0.79 | +0.3 | |
5,672,973 | + | +0.5 | |||
5,673,134 | + | Pf1N1B4_5113 | 0.17 | -0.0 | |
5,673,134 | + | Pf1N1B4_5113 | 0.17 | -0.5 | |
5,673,213 | - | +1.3 | |||
5,673,246 | + | Pf1N1B4_5113 | 0.29 | -1.0 | |
5,673,692 | + | Pf1N1B4_5113 | 0.79 | -0.7 | |
5,673,692 | + | Pf1N1B4_5113 | 0.79 | +0.4 | |
5,673,693 | - | Pf1N1B4_5113 | 0.80 | -1.3 | |
5,673,737 | + | Pf1N1B4_5113 | 0.84 | -0.8 | |
5,673,737 | + | Pf1N1B4_5113 | 0.84 | -1.3 | |
5,674,045 | + | Pf1N1B4_5114 | 0.21 | +1.0 | |
5,674,476 | - | Pf1N1B4_5114 | 0.72 | -0.2 | |
5,674,792 | - | -0.9 |
Or see this region's nucleotide sequence