Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4759
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,256,214 | + | -0.1 | |||
5,256,215 | - | -1.7 | |||
5,256,215 | - | +0.3 | |||
5,256,368 | - | Pf1N1B4_4758 | 0.19 | +1.3 | |
5,256,521 | + | Pf1N1B4_4758 | 0.34 | +0.9 | |
5,256,522 | - | Pf1N1B4_4758 | 0.34 | +1.5 | |
5,256,590 | - | Pf1N1B4_4758 | 0.41 | -1.7 | |
5,256,776 | - | Pf1N1B4_4758 | 0.59 | -0.3 | |
5,257,067 | - | Pf1N1B4_4758 | 0.88 | +0.5 | |
5,257,067 | - | Pf1N1B4_4758 | 0.88 | -0.7 | |
5,257,067 | - | Pf1N1B4_4758 | 0.88 | +0.5 | |
5,257,277 | + | Pf1N1B4_4759 | 0.16 | +0.3 | |
5,257,304 | + | Pf1N1B4_4759 | 0.21 | -0.6 | |
5,257,305 | - | Pf1N1B4_4759 | 0.22 | -2.1 | |
5,257,645 | + | +0.9 | |||
5,257,901 | + | +1.5 | |||
5,258,097 | + | -0.7 | |||
5,258,180 | + | Pf1N1B4_4760 | 0.39 | +0.0 | |
5,258,226 | + | +0.9 | |||
5,258,503 | - | Pf1N1B4_4761 | 0.41 | +0.0 | |
5,258,503 | - | Pf1N1B4_4761 | 0.41 | -0.6 | |
5,258,558 | + | Pf1N1B4_4761 | 0.54 | -1.0 |
Or see this region's nucleotide sequence