Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3190

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
3,570,938	+				+2.2
3,570,961	+				-1.2
3,570,961	+				+2.9
3,570,961	+				+0.7
3,570,961	+				+0.9
3,570,961	+				-1.1
3,570,962	-				-1.9
3,571,085	-				-0.1
3,571,109	+				+1.1
3,571,109	+				-0.5
3,571,109	+				-0.7
3,571,109	+				+0.2
3,571,109	+				-0.5
3,571,109	+				-1.7
3,571,110	-				+0.4
3,571,110	-				+0.3
3,571,110	-				+1.6
3,571,110	-				-1.1
3,571,110	-				+0.1
3,571,110	-				+1.3
3,571,110	-				-0.1
3,571,110	-				-0.5
3,571,119	+				-0.5
3,571,119	+				-1.7
3,571,119	+				+0.4
3,571,119	+				+2.0
3,571,119	+				+0.3
3,571,119	+				+0.7
3,571,119	+				+0.9
3,571,119	+				+1.1
3,571,135	-				+0.4
3,571,135	-				+0.9
3,571,381	+		Pf1N1B4_3189	0.39	+2.2
3,571,381	+		Pf1N1B4_3189	0.39	-1.5
3,571,381	+		Pf1N1B4_3189	0.39	+0.7
3,571,382	-		Pf1N1B4_3189	0.39	+0.7
3,571,382	-				-1.5
3,571,382	-		Pf1N1B4_3189	0.39	-1.1
3,571,533	+		Pf1N1B4_3189	0.60	-1.0
3,571,533	+		Pf1N1B4_3189	0.60	+0.9
3,571,533	+		Pf1N1B4_3189	0.60	-1.7
3,571,533	+		Pf1N1B4_3189	0.60	-0.9
3,571,533	+		Pf1N1B4_3189	0.60	+0.9
3,571,533	+				+0.3
3,571,533	-		Pf1N1B4_3189	0.60	+1.1
3,571,534	-		Pf1N1B4_3189	0.61	-0.1
3,571,625	+		Pf1N1B4_3189	0.74	+0.1
3,571,625	+		Pf1N1B4_3189	0.74	-0.1
3,571,625	+		Pf1N1B4_3189	0.74	+1.7
3,571,625	+		Pf1N1B4_3189	0.74	+2.0
3,571,625	+		Pf1N1B4_3189	0.74	+0.3
3,571,625	+		Pf1N1B4_3189	0.74	+1.2
3,571,626	-				+1.3
3,571,626	-		Pf1N1B4_3189	0.74	+0.0
3,571,670	+		Pf1N1B4_3189	0.80	+1.0
3,571,670	+		Pf1N1B4_3189	0.80	+1.7
3,571,670	+		Pf1N1B4_3189	0.80	-1.6
3,571,671	-		Pf1N1B4_3189	0.80	+0.5
3,571,671	-				-0.1
3,571,671	-		Pf1N1B4_3189	0.80	-0.6
3,571,699	+		Pf1N1B4_3189	0.84	-0.5
3,571,699	+		Pf1N1B4_3189	0.84	+2.3
3,571,699	+		Pf1N1B4_3189	0.84	+0.5
3,571,700	-		Pf1N1B4_3189	0.84	-0.7
3,571,700	-		Pf1N1B4_3189	0.84	-1.5
3,571,700	-		Pf1N1B4_3189	0.84	+0.3
3,571,700	-		Pf1N1B4_3189	0.84	+0.5
3,571,805	+				-0.4
3,571,830	+				-1.7
3,571,830	+				+1.5
3,571,830	+				-0.1
3,571,830	+				+1.5
3,571,830	+				+0.3
3,571,830	+				-0.1
3,571,830	+				-1.5
3,571,831	-				-0.5
3,571,831	-				+0.5
3,571,831	-				+1.3
3,571,831	-				+0.5
3,571,852	+				+0.1
3,571,852	+				-1.8
3,571,852	+				+0.6
3,571,909	+				+0.2
3,571,909	+				-0.7
3,571,909	+				+0.5
3,571,909	+				-1.0
3,571,909	+				+0.9
3,571,909	+				-2.6
3,571,909	+				-0.9
3,571,910	-				-1.7
3,571,910	-				+0.3
3,571,910	-				+0.4
3,571,910	-				+1.4
3,571,910	-				-0.6
3,571,910	-				-1.1
3,571,910	-				-0.1
3,572,063	-				-0.7
3,572,063	-		Pf1N1B4_3190	0.20	-0.5
3,572,182	+		Pf1N1B4_3190	0.38	-0.7
3,572,306	+		Pf1N1B4_3190	0.56	-2.5
3,572,306	+		Pf1N1B4_3190	0.56	+0.4
3,572,306	+		Pf1N1B4_3190	0.56	-1.9
3,572,306	+		Pf1N1B4_3190	0.56	-1.1
3,572,307	-		Pf1N1B4_3190	0.56	-0.1
3,572,307	-		Pf1N1B4_3190	0.56	-1.0
3,572,307	-		Pf1N1B4_3190	0.56	+0.5
3,572,307	-		Pf1N1B4_3190	0.56	+0.3
3,572,392	+		Pf1N1B4_3190	0.68	-0.5
3,572,392	+		Pf1N1B4_3190	0.68	+0.3
3,572,392	+		Pf1N1B4_3190	0.68	+1.9
3,572,392	+		Pf1N1B4_3190	0.68	+1.5
3,572,393	-		Pf1N1B4_3190	0.68	-1.9
3,572,393	-		Pf1N1B4_3190	0.68	+0.9
3,572,432	+		Pf1N1B4_3190	0.74	-1.9
3,572,433	-		Pf1N1B4_3190	0.74	-1.5
3,572,433	-		Pf1N1B4_3190	0.74	-0.7
3,572,433	-		Pf1N1B4_3190	0.74	-1.7
3,572,433	-		Pf1N1B4_3190	0.74	-1.1
3,572,478	-		Pf1N1B4_3190	0.81	-1.2
3,572,618	+				-1.3
3,572,618	+				-0.3
3,572,618	+				+0.5
3,572,618	+				-0.3
3,572,618	+				+0.0
3,572,619	-				+0.5
3,572,619	-				-2.1
3,572,619	-				-0.7
3,572,619	-				+1.2
3,572,619	-				-1.1
3,572,619	-				-0.2
3,572,619	-				-0.1
3,572,619	-				-1.5
3,572,619	-				+0.0
3,572,619	-				-1.1
3,572,621	+				-1.5
3,572,621	+				+0.5
3,572,621	+				+0.9
3,572,622	-				-0.9
3,572,622	-				+1.8
3,572,622	-				-0.1
3,572,713	+				-0.8
3,572,714	-				+0.6
3,572,714	-				+0.9
3,572,721	+				+1.5
3,572,740	-				-0.3
3,572,740	-				-0.1
3,572,740	-				+1.5
3,572,759	+				+1.6
3,572,759	+				-0.6
3,572,759	+				+1.6
3,572,759	+				-0.1
3,572,759	+				+0.2
3,572,759	+				-0.1
3,572,760	-				-2.1
3,572,760	-				+0.9
3,572,760	-				-0.1
3,572,760	-				+1.2
3,572,760	-				-1.5
3,572,760	-				-1.3
3,572,760	-				+0.9
3,572,760	-				+0.5
3,572,760	-				-1.5
3,572,760	-				-1.0
3,572,760	-				+1.1
3,572,760	-				+1.0
3,572,833	+		Pf1N1B4_3191	0.26	-0.1
3,572,834	-		Pf1N1B4_3191	0.27	-1.5
3,572,834	-		Pf1N1B4_3191	0.27	+0.8
3,573,036	+				+1.6
3,573,037	-				+0.3
3,573,037	-				+0.9
3,573,047	+				-0.7
3,573,048	-				+0.9
3,573,048	-				-0.5
3,573,060	+				-0.7
3,573,060	+				-0.1
3,573,060	+				+0.2
3,573,135	+				-1.1
3,573,135	+				+0.3
3,573,135	+		Pf1N1B4_3192	0.14	-0.1
3,573,136	-		Pf1N1B4_3192	0.14	+0.3
3,573,343	+		Pf1N1B4_3192	0.41	-0.7
3,573,343	+		Pf1N1B4_3192	0.41	-0.6
3,573,343	+		Pf1N1B4_3192	0.41	+0.9
3,573,343	+		Pf1N1B4_3192	0.41	+0.7
3,573,343	+		Pf1N1B4_3192	0.41	+0.0
3,573,344	-		Pf1N1B4_3192	0.41	+0.1
3,573,344	-		Pf1N1B4_3192	0.41	-0.1
3,573,344	-		Pf1N1B4_3192	0.41	+0.1
3,573,344	-		Pf1N1B4_3192	0.41	-0.0
3,573,344	-		Pf1N1B4_3192	0.41	+0.4
3,573,344	-		Pf1N1B4_3192	0.41	+0.2
3,573,344	-		Pf1N1B4_3192	0.41	+1.4
3,573,489	+		Pf1N1B4_3192	0.60	-0.9
3,573,489	+		Pf1N1B4_3192	0.60	+1.1
3,573,490	-		Pf1N1B4_3192	0.60	+0.9
3,573,490	-		Pf1N1B4_3192	0.60	+0.3
3,573,525	+		Pf1N1B4_3192	0.65	-0.9
3,573,590	-		Pf1N1B4_3192	0.74	+0.9