Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_260

Experiment: Spectinomycin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_258 and Pf1N1B4_259 overlap by 4 nucleotidesPf1N1B4_259 and Pf1N1B4_260 are separated by 187 nucleotidesPf1N1B4_260 and Pf1N1B4_261 are separated by 226 nucleotides Pf1N1B4_258 - Organic hydroperoxide resistance transcriptional regulator, at 318,825 to 319,286 _258 Pf1N1B4_259 - Glutathione peroxidase family protein, at 319,283 to 319,768 _259 Pf1N1B4_260 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 319,956 to 320,351 _260 Pf1N1B4_261 - Aspartate aminotransferase (EC 2.6.1.1), at 320,578 to 321,789 _261 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2 3at 319.157 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.191 kb on - strand, within Pf1N1B4_258at 319.199 kb on - strand, within Pf1N1B4_258at 319.199 kb on - strand, within Pf1N1B4_258at 319.199 kb on - strand, within Pf1N1B4_258at 319.199 kb on - strand, within Pf1N1B4_258at 319.229 kb on - strand, within Pf1N1B4_258at 319.229 kb on - strand, within Pf1N1B4_258at 319.229 kb on - strand, within Pf1N1B4_258at 319.229 kb on - strand, within Pf1N1B4_258at 319.229 kb on - strand, within Pf1N1B4_258at 319.280 kb on + strandat 319.281 kb on - strandat 319.281 kb on - strandat 319.281 kb on - strandat 319.281 kb on - strandat 319.281 kb on - strandat 319.281 kb on - strandat 319.281 kb on - strandat 319.509 kb on + strand, within Pf1N1B4_259at 319.611 kb on + strand, within Pf1N1B4_259at 319.611 kb on + strand, within Pf1N1B4_259at 319.611 kb on + strand, within Pf1N1B4_259at 319.612 kb on - strand, within Pf1N1B4_259at 319.641 kb on + strand, within Pf1N1B4_259at 319.664 kb on - strand, within Pf1N1B4_259at 319.857 kb on + strandat 319.857 kb on + strandat 319.958 kb on - strandat 319.958 kb on - strandat 319.999 kb on + strand, within Pf1N1B4_260at 320.000 kb on - strand, within Pf1N1B4_260at 320.140 kb on + strand, within Pf1N1B4_260at 320.141 kb on - strand, within Pf1N1B4_260at 320.141 kb on - strand, within Pf1N1B4_260at 320.245 kb on + strand, within Pf1N1B4_260at 320.245 kb on + strandat 320.245 kb on + strand, within Pf1N1B4_260at 320.293 kb on + strand, within Pf1N1B4_260at 320.294 kb on - strand, within Pf1N1B4_260at 320.294 kb on - strand, within Pf1N1B4_260at 320.355 kb on + strandat 320.355 kb on + strandat 320.355 kb on + strandat 320.356 kb on - strandat 320.356 kb on - strandat 320.356 kb on - strandat 320.356 kb on - strandat 320.386 kb on + strandat 320.413 kb on + strandat 320.413 kb on + strandat 320.413 kb on + strandat 320.413 kb on + strandat 320.413 kb on + strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.414 kb on - strandat 320.473 kb on + strandat 320.473 kb on + strandat 320.473 kb on + strandat 320.473 kb on + strandat 320.474 kb on - strandat 320.474 kb on - strandat 320.474 kb on - strandat 320.528 kb on - strandat 320.528 kb on - strandat 320.528 kb on - strandat 320.539 kb on + strandat 320.540 kb on - strandat 320.540 kb on - strandat 320.540 kb on - strandat 320.540 kb on - strandat 320.617 kb on + strandat 320.618 kb on - strandat 320.777 kb on - strand, within Pf1N1B4_261at 320.824 kb on + strand, within Pf1N1B4_261at 320.824 kb on + strand, within Pf1N1B4_261at 320.824 kb on + strand, within Pf1N1B4_261at 320.825 kb on - strand, within Pf1N1B4_261at 320.825 kb on - strand, within Pf1N1B4_261at 320.827 kb on + strand, within Pf1N1B4_261at 320.827 kb on + strand, within Pf1N1B4_261at 320.828 kb on - strand, within Pf1N1B4_261at 320.828 kb on - strand, within Pf1N1B4_261at 320.828 kb on - strand, within Pf1N1B4_261at 320.828 kb on - strand, within Pf1N1B4_261at 320.869 kb on + strand, within Pf1N1B4_261at 320.869 kb on + strand, within Pf1N1B4_261at 320.869 kb on + strand, within Pf1N1B4_261at 320.869 kb on + strand, within Pf1N1B4_261at 320.869 kb on + strand, within Pf1N1B4_261at 320.869 kb on + strand, within Pf1N1B4_261at 320.870 kb on - strand, within Pf1N1B4_261at 320.870 kb on - strand, within Pf1N1B4_261at 320.870 kb on - strand, within Pf1N1B4_261at 320.870 kb on - strand, within Pf1N1B4_261at 320.870 kb on - strandat 320.870 kb on - strand, within Pf1N1B4_261at 320.870 kb on - strand, within Pf1N1B4_261at 320.870 kb on - strand, within Pf1N1B4_261at 321.010 kb on + strand, within Pf1N1B4_261at 321.010 kb on + strand, within Pf1N1B4_261at 321.010 kb on + strandat 321.011 kb on - strand, within Pf1N1B4_261at 321.093 kb on + strand, within Pf1N1B4_261at 321.127 kb on + strand, within Pf1N1B4_261at 321.202 kb on + strand, within Pf1N1B4_261at 321.202 kb on + strandat 321.202 kb on + strand, within Pf1N1B4_261at 321.217 kb on + strand, within Pf1N1B4_261at 321.217 kb on + strand, within Pf1N1B4_261at 321.217 kb on + strand, within Pf1N1B4_261at 321.218 kb on - strand, within Pf1N1B4_261at 321.230 kb on + strand, within Pf1N1B4_261

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
remove
319,157 - Pf1N1B4_258 0.72 +2.2
319,191 - Pf1N1B4_258 0.79 -0.9
319,191 - Pf1N1B4_258 0.79 -1.3
319,191 - Pf1N1B4_258 0.79 -0.9
319,191 - Pf1N1B4_258 0.79 +0.4
319,191 - Pf1N1B4_258 0.79 +3.0
319,191 - Pf1N1B4_258 0.79 -1.2
319,191 - Pf1N1B4_258 0.79 +1.2
319,191 - Pf1N1B4_258 0.79 +2.2
319,191 - Pf1N1B4_258 0.79 +1.1
319,191 - Pf1N1B4_258 0.79 +0.2
319,199 - Pf1N1B4_258 0.81 -0.3
319,199 - Pf1N1B4_258 0.81 -1.3
319,199 - Pf1N1B4_258 0.81 +0.1
319,199 - Pf1N1B4_258 0.81 +0.3
319,229 - Pf1N1B4_258 0.87 -0.9
319,229 - Pf1N1B4_258 0.87 -0.3
319,229 - Pf1N1B4_258 0.87 -0.3
319,229 - Pf1N1B4_258 0.87 -1.2
319,229 - Pf1N1B4_258 0.87 -0.4
319,280 + -0.9
319,281 - +1.4
319,281 - +0.5
319,281 - +0.7
319,281 - +1.7
319,281 - +0.4
319,281 - +0.4
319,281 - +1.2
319,509 + Pf1N1B4_259 0.47 -0.5
319,611 + Pf1N1B4_259 0.67 +2.0
319,611 + Pf1N1B4_259 0.67 +2.2
319,611 + Pf1N1B4_259 0.67 +1.1
319,612 - Pf1N1B4_259 0.68 +1.2
319,641 + Pf1N1B4_259 0.74 +0.7
319,664 - Pf1N1B4_259 0.78 +0.1
319,857 + -0.0
319,857 + -0.5
319,958 - +0.2
319,958 - +1.0
319,999 + Pf1N1B4_260 0.11 -0.1
320,000 - Pf1N1B4_260 0.11 -0.9
320,140 + Pf1N1B4_260 0.46 -0.0
320,141 - Pf1N1B4_260 0.47 -1.9
320,141 - Pf1N1B4_260 0.47 -0.6
320,245 + Pf1N1B4_260 0.73 -2.1
320,245 + -0.3
320,245 + Pf1N1B4_260 0.73 +1.1
320,293 + Pf1N1B4_260 0.85 -0.8
320,294 - Pf1N1B4_260 0.85 -1.3
320,294 - Pf1N1B4_260 0.85 -0.3
320,355 + +0.2
320,355 + -1.0
320,355 + +1.8
320,356 - -0.9
320,356 - +0.7
320,356 - +1.4
320,356 - +1.9
320,386 + +2.0
320,413 + +0.1
320,413 + -0.9
320,413 + +0.9
320,413 + +0.7
320,413 + -0.7
320,414 - -0.5
320,414 - -0.1
320,414 - +1.9
320,414 - +0.1
320,414 - -0.9
320,414 - +0.7
320,414 - +0.4
320,414 - -0.8
320,414 - +0.7
320,414 - +0.3
320,473 + -0.3
320,473 + +1.7
320,473 + +0.7
320,473 + +0.4
320,474 - +0.7
320,474 - +1.0
320,474 - +0.2
320,528 - +0.3
320,528 - -1.3
320,528 - -0.3
320,539 + +1.1
320,540 - -0.0
320,540 - -0.9
320,540 - +1.2
320,540 - -1.7
320,617 + +0.3
320,618 - -0.1
320,777 - Pf1N1B4_261 0.16 +0.2
320,824 + Pf1N1B4_261 0.20 +0.4
320,824 + Pf1N1B4_261 0.20 +0.3
320,824 + Pf1N1B4_261 0.20 +0.8
320,825 - Pf1N1B4_261 0.20 +0.1
320,825 - Pf1N1B4_261 0.20 +1.0
320,827 + Pf1N1B4_261 0.21 +0.7
320,827 + Pf1N1B4_261 0.21 +1.0
320,828 - Pf1N1B4_261 0.21 +0.7
320,828 - Pf1N1B4_261 0.21 +1.7
320,828 - Pf1N1B4_261 0.21 +0.4
320,828 - Pf1N1B4_261 0.21 -0.6
320,869 + Pf1N1B4_261 0.24 -0.3
320,869 + Pf1N1B4_261 0.24 +0.2
320,869 + Pf1N1B4_261 0.24 +0.5
320,869 + Pf1N1B4_261 0.24 +0.7
320,869 + Pf1N1B4_261 0.24 -0.6
320,869 + Pf1N1B4_261 0.24 +3.0
320,870 - Pf1N1B4_261 0.24 +0.2
320,870 - Pf1N1B4_261 0.24 +1.5
320,870 - Pf1N1B4_261 0.24 +0.4
320,870 - Pf1N1B4_261 0.24 +0.4
320,870 - -0.9
320,870 - Pf1N1B4_261 0.24 +0.3
320,870 - Pf1N1B4_261 0.24 -0.3
320,870 - Pf1N1B4_261 0.24 -0.3
321,010 + Pf1N1B4_261 0.36 +1.2
321,010 + Pf1N1B4_261 0.36 +2.2
321,010 + -0.3
321,011 - Pf1N1B4_261 0.36 +0.9
321,093 + Pf1N1B4_261 0.42 -0.8
321,127 + Pf1N1B4_261 0.45 +1.8
321,202 + Pf1N1B4_261 0.51 -1.7
321,202 + +0.7
321,202 + Pf1N1B4_261 0.51 +0.4
321,217 + Pf1N1B4_261 0.53 +0.3
321,217 + Pf1N1B4_261 0.53 -0.8
321,217 + Pf1N1B4_261 0.53 +1.0
321,218 - Pf1N1B4_261 0.53 -2.2
321,230 + Pf1N1B4_261 0.54 +0.5

Or see this region's nucleotide sequence