Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1958

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
2,237,489	+		Pf1N1B4_1956	0.54	-0.5
2,237,489	+		Pf1N1B4_1956	0.54	-0.2
2,237,489	+		Pf1N1B4_1956	0.54	-0.6
2,237,489	+		Pf1N1B4_1956	0.54	+0.6
2,237,489	+		Pf1N1B4_1956	0.54	+0.3
2,237,489	+		Pf1N1B4_1956	0.54	-1.2
2,237,490	-		Pf1N1B4_1956	0.54	-0.8
2,237,490	-				-0.3
2,237,490	-		Pf1N1B4_1956	0.54	+0.0
2,237,490	-		Pf1N1B4_1956	0.54	-0.7
2,237,560	-		Pf1N1B4_1956	0.62	+1.0
2,237,579	-		Pf1N1B4_1956	0.64	-1.4
2,237,611	+		Pf1N1B4_1956	0.68	+0.3
2,237,611	+		Pf1N1B4_1956	0.68	+1.8
2,237,611	+		Pf1N1B4_1956	0.68	+0.0
2,237,611	+		Pf1N1B4_1956	0.68	+1.0
2,237,611	+				+1.3
2,237,611	+		Pf1N1B4_1956	0.68	-0.9
2,237,612	-		Pf1N1B4_1956	0.68	+0.1
2,237,612	-		Pf1N1B4_1956	0.68	-1.5
2,237,612	-		Pf1N1B4_1956	0.68	+0.8
2,237,908	+		Pf1N1B4_1957	0.17	+0.3
2,238,003	+				+0.4
2,238,003	+				+0.3
2,238,003	+				-1.1
2,238,004	-				+0.6
2,238,004	-				+0.3
2,238,004	-				+1.3
2,238,090	+				+1.6
2,238,091	-				+1.0
2,238,091	-				+1.0
2,238,156	+				-0.1
2,238,157	-				-0.7
2,238,161	+				+0.1
2,238,231	+				+0.1
2,238,284	-				-0.7
2,238,284	-				+0.6
2,238,284	-				-0.7
2,238,299	+				+1.2
2,238,299	+				-0.2
2,238,299	+				+1.3
2,238,300	-				-1.1
2,238,300	-				+1.5
2,238,300	-				+1.0
2,238,300	-				+1.1
2,238,300	-				-0.5
2,238,300	-				-0.1
2,238,550	+		Pf1N1B4_1958	0.28	-0.2
2,238,605	-				+1.3
2,238,605	-		Pf1N1B4_1958	0.42	-1.7
2,238,605	-		Pf1N1B4_1958	0.42	-0.1
2,238,605	-		Pf1N1B4_1958	0.42	-0.2
2,238,825	+				+0.6
2,238,825	+				+1.7
2,238,825	+				+0.3
2,238,826	-				+0.6
2,238,826	-				+0.8
2,238,826	-				-0.5
2,238,885	+				-1.3
2,238,886	-				-0.1
2,238,886	-				+0.7
2,238,886	-				-0.7
2,238,923	+				+0.4
2,238,923	+				+0.5
2,238,923	+				+0.3
2,238,929	+				-0.5
2,238,929	+				+1.3
2,238,929	+				-2.2
2,238,930	-				+1.6
2,238,952	+				-1.8
2,238,952	+				+0.9
2,238,952	+				-0.7
2,238,952	+				-2.3
2,238,953	-				-0.7
2,238,953	-				-0.3
2,238,962	+				+0.9
2,238,962	+				+1.3
2,238,962	+				+0.1
2,238,962	+				+2.3
2,238,962	+				+2.0
2,238,962	+				-0.6
2,238,962	+				-0.2
2,238,963	-				+0.5
2,238,963	-				+0.5
2,238,963	-				+1.9
2,238,963	-				+0.7
2,238,963	-				-0.5
2,239,145	+		Pf1N1B4_1959	0.20	+0.1
2,239,145	+		Pf1N1B4_1959	0.20	-0.0
2,239,146	-		Pf1N1B4_1959	0.20	-0.5
2,239,146	-		Pf1N1B4_1959	0.20	+0.8
2,239,146	-		Pf1N1B4_1959	0.20	+0.0
2,239,146	-		Pf1N1B4_1959	0.20	+0.1
2,239,146	-		Pf1N1B4_1959	0.20	+1.6
2,239,146	-		Pf1N1B4_1959	0.20	-1.1
2,239,190	+		Pf1N1B4_1959	0.24	+0.7
2,239,191	-		Pf1N1B4_1959	0.24	+0.8
2,239,249	+		Pf1N1B4_1959	0.29	-1.9
2,239,249	+				+1.3
2,239,249	+		Pf1N1B4_1959	0.29	+0.3
2,239,249	+		Pf1N1B4_1959	0.29	+1.3
2,239,250	-		Pf1N1B4_1959	0.29	-0.5
2,239,250	-		Pf1N1B4_1959	0.29	+1.3
2,239,250	-		Pf1N1B4_1959	0.29	+0.7
2,239,250	-				+2.3
2,239,259	+		Pf1N1B4_1959	0.30	+0.6
2,239,317	+		Pf1N1B4_1959	0.35	+0.6
2,239,318	-		Pf1N1B4_1959	0.35	+1.3
2,239,395	-				+0.3
2,239,439	+		Pf1N1B4_1959	0.46	-0.3
2,239,439	+		Pf1N1B4_1959	0.46	+0.6
2,239,439	+		Pf1N1B4_1959	0.46	-0.7
2,239,439	+		Pf1N1B4_1959	0.46	-0.7
2,239,439	+		Pf1N1B4_1959	0.46	+0.1
2,239,440	-		Pf1N1B4_1959	0.46	+0.4
2,239,440	-		Pf1N1B4_1959	0.46	+0.9
2,239,440	-		Pf1N1B4_1959	0.46	+0.7
2,239,440	-		Pf1N1B4_1959	0.46	+0.7
2,239,440	-		Pf1N1B4_1959	0.46	-0.5
2,239,440	-		Pf1N1B4_1959	0.46	-0.3
2,239,473	+		Pf1N1B4_1959	0.49	+0.6
2,239,473	+		Pf1N1B4_1959	0.49	-0.3
2,239,604	+		Pf1N1B4_1959	0.60	+0.7
2,239,604	+		Pf1N1B4_1959	0.60	+1.2
2,239,604	+		Pf1N1B4_1959	0.60	-0.8
2,239,604	+		Pf1N1B4_1959	0.60	-1.0
2,239,604	+		Pf1N1B4_1959	0.60	+1.3
2,239,604	+		Pf1N1B4_1959	0.60	+0.5
2,239,604	+		Pf1N1B4_1959	0.60	-1.5
2,239,604	+		Pf1N1B4_1959	0.60	+0.2
2,239,604	+		Pf1N1B4_1959	0.60	+1.1
2,239,604	+		Pf1N1B4_1959	0.60	+0.9
2,239,604	+		Pf1N1B4_1959	0.60	+0.3
2,239,604	+		Pf1N1B4_1959	0.60	-1.1
2,239,604	+		Pf1N1B4_1959	0.60	+0.6
2,239,604	+		Pf1N1B4_1959	0.60	+1.1
2,239,605	-		Pf1N1B4_1959	0.60	-0.4
2,239,605	-		Pf1N1B4_1959	0.60	-0.6
2,239,605	-		Pf1N1B4_1959	0.60	-0.9
2,239,605	-		Pf1N1B4_1959	0.60	+1.6
2,239,605	-		Pf1N1B4_1959	0.60	-2.3
2,239,605	-		Pf1N1B4_1959	0.60	+0.5
2,239,605	-				-0.1
2,239,605	-		Pf1N1B4_1959	0.60	+0.0
2,239,605	-		Pf1N1B4_1959	0.60	+1.4
2,239,605	-				-0.3
2,239,605	-		Pf1N1B4_1959	0.60	-0.5
2,239,608	+		Pf1N1B4_1959	0.61	+0.7
2,239,608	+		Pf1N1B4_1959	0.61	+0.7
2,239,608	+		Pf1N1B4_1959	0.61	+1.4
2,239,608	+		Pf1N1B4_1959	0.61	+0.4
2,239,608	+		Pf1N1B4_1959	0.61	-1.7
2,239,609	-		Pf1N1B4_1959	0.61	-0.1
2,239,609	-		Pf1N1B4_1959	0.61	+0.8
2,239,609	-		Pf1N1B4_1959	0.61	-0.7
2,239,709	+		Pf1N1B4_1959	0.70	-0.1
2,239,709	+		Pf1N1B4_1959	0.70	+0.6
2,239,709	+		Pf1N1B4_1959	0.70	+0.3
2,239,710	-		Pf1N1B4_1959	0.70	-1.5
2,239,710	-		Pf1N1B4_1959	0.70	-0.2
2,239,717	+		Pf1N1B4_1959	0.70	-0.3
2,239,717	+		Pf1N1B4_1959	0.70	+1.6
2,239,717	+		Pf1N1B4_1959	0.70	+1.1
2,239,781	+		Pf1N1B4_1959	0.76	+1.0
2,239,781	+		Pf1N1B4_1959	0.76	-0.9
2,239,781	+		Pf1N1B4_1959	0.76	+1.3
2,239,782	-		Pf1N1B4_1959	0.76	+0.4
2,239,782	-		Pf1N1B4_1959	0.76	-2.4